Thiocapsa sp. M50B4: KFB96_14490
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Entry
KFB96_14490 CDS
T07253
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
thim
Thiocapsa sp. M50B4
Pathway
thim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFB96_14490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thim03019
]
KFB96_14490
03400 DNA repair and recombination proteins [BR:
thim03400
]
KFB96_14490
Enzymes [BR:
thim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KFB96_14490
Messenger RNA biogenesis [BR:
thim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KFB96_14490
DNA repair and recombination proteins [BR:
thim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KFB96_14490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
Helicase_C
UvrD_C
UvrD_C_2
Viral_helicase1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QVL46951
LinkDB
All DBs
Position
3187420..3192882
Genome browser
AA seq
1820 aa
AA seq
DB search
MPHDAPPTEPPPSGIDSLIERSLLLDLETGPDGAIHKIGAIRQGREFRRQGRFDPARTLD
ELERFAGDASFVVGHNLLGHDLPTLRARAPSLDLLGRRIIDTLYLSPLAFPANPYHRLVK
DYKLVRDSVADPVQDCRLAEQVLREQFDELVRRCTNGIADDTSLIATATSPAGAVGTSAE
GWTSSAQSTNASVGSDLGGLRSRSSTLPAVVTNTSARGDEGGERDLIRVFQFCFRGATLL
EANATGGDGLAAVFRLLSGELPSVTEVRETLLARWQGRACSSVAPRLILDHLSNPDRRPI
LAYAAAWLQVAGGSSVLPPWVRHRFPATVTLLKALRDTPCEDPICAWCREVNDPRAQLAR
WFGFDAFRAEPQAQDGGSLQEIVVRDGIADRSLLAILPTGGGKSLCFQLPALVRAHRRGT
LSVVISPLQALMKDQVDNLVKKTGATSAAAIYGLLTPPERGEVMERVRLGDIALLYISPE
QLRNRSVADVLASREIGCWIFDEAHCLSKWGHDFRPDYLYAGRFIRTLAGLQGVPVTPVA
CFTATAKRDVKTEILAYFREELGLDLVDYTGGVERDNLEFEVQVVGKHEKDARIHAILTD
HLGAPRSSEDPDPTGGAAVVYASTRKGTEALAERLGRQGWAVEAFHAGISAPEKKRIQES
FVTGELQVICATNAFGMGVDKEDVRLVVHADIPGSLESYIQEAGRAGRDRKPAACVLLYD
EQDIESQFRMESFSELSRRDIAEILRGVRRAKRDREGVVVVTSGELLRDEDLRLGFDPEA
TDADTRVRIAIAWLERAGLVERNENRTFVFQGRPAVASLEDAERKIRGLGLSAAQGQRWL
AILEAMLNTDPDDTFSADELARLPAFDRAANGQAGTPDPNSAPVPPWDRGDTPSQRVLRT
LHDMAGAGLLRDGPQLTAFVSHKVKNHSALILARVARLERAMLEVLREQDPDAQTGVWLP
LSLRRLNQHLLDQGHDSNPETLRTLLKGLTLDGRGLAGARGSLDLRQTDRDHYRLRLHRD
WPTLHRTAERRRAVADRILKALLAKLPDDAPANGALLVAFGTEELTGALRGDLALAAEVR
DPLAAVHRGLLFLHEHGAITLQNGFAVFRSAMTLRLLPQAKGRRYSEAQYQPLAQHYRER
VFQIHVMNEYARLGAEKIRQALNLVTGYFTLGKEAFVKRWLADRREQLLRATTAESFRRI
VEDLGNPEQIEIVAAPEDGNRLVLAGPGSGKTRVIVHRCAFLLRVLRVPAHRILVLCFNR
GAALELRRRLAELVGDDARGVTVQTYHGFAMRLTGRSYAERLAATTDAAPDFDGLIGETV
DLLEGRVDLPGIEPDEARERLLAGYRHILVDEYQDIDADQYRLVAAIAGRTVDEDKLTLL
AVGDDDQSIYAFRGANVECIRRFKEDYAADLHHLVENYRSTGHIVAAANALIAHNRERMK
RDHPIRVDRRRTIRPASGHWQDLDGHAKGRVLLLGVADPPRQAAALVARIEELRRLGGHD
WSDIAVLARRHVILEPVRALCEHKGIPVDWPGDLPPLHRVREIDAFLNTLAQHARKPMSA
RALLEWLPERPSPWRSLLQRLIADWTAEAGTTEVPAAEIAEFCYETLAEQRRDRRLGEGL
LLTTLHGAKGLEFPHVILADGAWDTHSDNEEERRLFYVGMTRAKETLTLMAIAGSRHPYL
AEIEGDWLIKAEPVVQSAPAEVIGRRYTRLTPADLDLGYAGRMPPDAAIHRHLAALGPDD
DLRWEQIGQDLFLLDQAGHRIGRLSKRTAARWLPDLDRIERIRVAALIRRDSRQNTPEHA
LHCRSEHWEVPLVEIRWRGS
NT seq
5463 nt
NT seq
+upstream
nt +downstream
nt
gtgccccatgacgccccaccgaccgagccgccaccgtccggcatcgattcgctcatcgag
cgctcgctcctgctcgacctggagaccgggccggacggggccatccacaagatcggggcg
atccgacaggggcgcgaattccgtcggcaagggagattcgatccggcgcgtacactcgat
gagctcgagcggtttgccggcgatgcgagcttcgttgtcggccacaacctgctcgggcac
gacctgccgacactgcgcgcccgagcgccgagtctggacctgctcgggcggcgcatcatc
gacaccctgtacctgtctcccttggcctttccggcaaacccctatcaccggctcgtcaag
gactacaagctggtgcgcgacagcgtcgccgacccggttcaggactgccgactggccgag
caggtgctgcgcgagcagttcgacgagctggtccggcgctgcaccaacgggattgccgac
gacacctcgctcatcgctacggcgacgtcgccggccggcgctgtagggacaagcgccgag
gggtggacaagctcagcgcagtccaccaacgccagcgtcggctcagacctcggtggactt
cgctctcgctcgtccaccctaccggccgttgtcacgaacacgtccgcgcgcggtgacgaa
ggcggcgagcgcgacctgatccgggtcttccagttctgtttccgcggcgcgaccctgctg
gaggccaatgccaccggcggcgacggcctggccgcggtctttcggctgctctcgggcgag
ctaccgagcgtcaccgaggtgcgcgagaccctgctggcccgctggcagggtcgcgcttgc
tcaagcgtcgccccacgcctgatcctggatcatctgtcgaaccccgaccgccgcccaatc
ctcgcctacgccgcggcttggcttcaggttgccggcggcagctcggtgctgccgccctgg
gtgcggcatcgctttccggcgacggtgacgctgctcaaggccctgcgggacaccccctgc
gaggatccaatctgtgcctggtgccgggaggtcaacgacccgcgggcgcagctcgcgcgc
tggttcggcttcgacgccttccgcgccgagccgcaggcgcaggacggcgggagcctgcag
gagatcgtcgtccgagacggcatcgcggatcgctcgctgctcgcgatcctgccgaccggc
ggcggcaaatcgttgtgctttcagttgccggccctggtgcgcgcgcatcggcgcggcacc
ctgagcgtcgtcatctcgcccctgcaggccctgatgaaggaccaggtggacaacctggtg
aaaaagacgggtgccaccagtgcggcggccatctacggtctcttgaccccgccggagcgc
ggcgaggtgatggagcgtgtgcgcctcggcgacatcgccctgctctacatctccccggag
cagctgcgcaatcgctcggtggcggacgtgctggccagccgcgagatcggctgctggatc
ttcgacgaggcccactgtttgtcgaaatggggccacgacttccgccccgactatctctat
gccggacgcttcatccgcaccctggccgggctccaaggcgtgccggtcacgcccgtggcc
tgcttcacggctacggcgaagcgtgacgtgaagaccgagatcctggcctatttccgcgag
gagctgggtctcgatctcgtcgattacaccggcggggtcgagcgcgacaacctcgaattc
gaggtccaagtcgtcggcaaacacgaaaaggacgcccggatccacgccatcctgaccgat
cacctcggcgcgccgagatcgagcgaggatccggacccgactggcggcgcggctgtggtc
tacgcctcgacgcgcaaaggcaccgaggccctggccgagcgcttgggccgtcaagggtgg
gcggtcgaggcattccacgccggcatttctgcgccggagaagaagcgcatccaggaatcc
ttcgtgaccggcgagctgcaggtgatctgcgcgaccaatgccttcgggatgggcgtggac
aaggaggacgtgcgcctggtcgtgcatgccgacatcccgggctcgctcgagagctatatt
caggaggccgggcgggccgggcgcgatcgcaaacccgcagcctgcgtactgctctacgac
gagcaggacatcgagtcgcagtttcgcatggagtccttctccgagctgtcgcgccgcgac
atcgccgagatcctgcgcggtgtgcgtcgggccaagcgcgaccgcgagggcgtcgtggtc
gtcaccagcggcgagctgttgcgcgacgaggacctcaggctgggtttcgatcccgaggcc
acggacgccgacacccgggtgcgcatcgccatcgcctggctggagcgtgccgggctggtg
gagcgcaacgagaaccgcaccttcgttttccagggccgccccgcggtagcaagcctggag
gatgccgagcggaagatccgcggtctgggcctctccgccgctcagggccaacgctggctg
gcgatcctggaggcgatgctcaacaccgacccggacgacaccttcagcgccgacgagctg
gcacgcctgccggccttcgaccgcgccgcgaatggtcaggccggtacgcccgacccaaac
tcggccccggtcccgccctgggatcgcggcgacaccccgtcgcagcgcgtcctgcgcacc
ctccacgacatggccggcgccggtctcttgcgtgacggcccgcagctcacggccttcgtc
agtcacaaggtcaagaatcattcggccttgatcctcgcgcgggtggcgcgcctggagcgg
gccatgctggaggtcttgcgcgagcaggacccggacgcccagaccggcgtctggctgccg
ctctcgctacgccgtctcaaccaacatctccttgatcagggccacgacagcaaccccgag
accctgcgcaccctgctcaagggcctgaccctggacggtcgcggtctggccggcgcccgc
ggcagcctggatctgcgccagaccgaccgcgaccactaccgcctgcgtctgcatcgcgat
tggccgaccctgcaccgcaccgccgagcgccgccgcgccgtggccgaccgtatcctcaag
gcgctcttggccaagctcccggacgatgcccccgccaacggcgccttgttggtggcgttc
ggcacggaggagctgaccggcgcgctgcgcggcgatctggccctcgccgccgaggtgcgt
gacccgctggcggctgtacatcgtggcctgctgttcctgcacgaacacggcgccatcacc
ctgcagaacggattcgcggtgttccgctcggccatgaccctgcgcctgctcccgcaggcg
aagggacgacgctacagcgaggcccagtaccagccgctggctcagcactatcgcgagcgg
gtgttccagatccatgtcatgaacgagtacgcccggctgggcgcggagaagatccgccag
gccctgaatctggtcaccggctacttcacgctcggcaaggaggcgttcgtgaaacgctgg
ctcgccgaccgccgcgagcagctcctgcgcgcgaccaccgccgagtccttccgccgcatc
gtcgaggatctgggtaaccccgagcagatcgagatcgtcgccgcccccgaggacggcaac
cgtctggtgctggccgggcccggctcgggcaagacccgcgtcatcgtccaccgttgcgct
tttctgctgcgggtgctgcgcgtgccggcgcaccgcatcctagtgctttgcttcaaccgc
ggtgcggcgctcgagctgcgccgccggctcgcagagctggtcggggacgacgcccgcggt
gttacggtacagacctaccacggctttgcgatgcgcctgacggggcgttcctacgccgag
cgtctggccgcaacgaccgatgccgcgcccgacttcgacggtctcatcggcgagaccgtg
gacctgctcgagggccgcgtggacctgcccggcatcgagcccgacgaggcgcgcgagcgg
ctgctcgccggttatcggcacatcctggtcgacgagtatcaggacatcgacgcggatcag
taccggctggtcgcagccatcgccgggcggacggtcgacgaggacaagctgaccctgctg
gccgtcggggacgacgaccagagcatctacgccttccgcggcgcgaacgtcgagtgcatc
cgccgcttcaaagaggactacgccgccgatctgcatcatctggtcgagaactatcgctcg
accggccacatcgtcgccgccgcgaacgccttgatcgcgcacaaccgcgaacgaatgaag
cgcgaccatccgatccgggtcgaccggcgtcgcaccatccggcccgccagcgggcattgg
caggatctcgacggtcatgcgaaggggcgggtgctgcttctcggcgtggccgatccgccg
cgccaggccgctgcgctggtcgcccggatcgaggagcttcggcgcctcggggggcacgac
tggtcggatatcgccgtcctcgcccgccgccatgtcatcctggagccggtccgtgcactc
tgcgagcacaaaggcatcccggtcgactggcccggcgacctgccgcccctgcaccgagta
cgcgagatcgacgccttcctgaacaccctcgcgcagcacgcacgcaaaccgatgagcgct
cgggcgctgctggagtggctgcctgagcgcccgagcccttggcgctctctcctgcaacgc
ttgatagcggattggacggccgaggccggcaccaccgaggtccctgccgccgagatcgcg
gagttttgctacgagaccctcgccgagcagcgccgcgaccgccggctcggcgagggcctg
ctgctgaccacgctgcacggcgccaaggggctggagtttccccacgtcatcctcgccgac
ggcgcatgggacacgcattcggacaacgaggaggagcgccgactcttctatgtcggcatg
acacgggcaaaggagaccctgacgctgatggcgatcgcgggcagccgccacccctatctg
gccgagatcgagggcgattggctgatcaaggccgagccggtcgtgcagtccgcgcccgcc
gaggtcatcgggcgtcgttacacgcgcctgacccccgcggacctggacctcggctacgcc
ggacggatgccgccggatgcggcgatccaccgtcatctggccgcactcggcccggacgac
gacctgcgttgggagcagatcggtcaggacctgtttctactcgaccaagcgggccatcgg
atcgggcgcctgtccaaacgcacggcggcccgttggctgcccgacctcgatcgcatcgag
cggatccgcgtcgctgccctgatccgccgcgacagtcgacaaaatacgcccgagcatgcg
ctgcactgccgctcggagcattgggaggtgccgctggtggagatccgctggcgcgggtct
tga
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