Thiohalocapsa sp. PB-PSB1: N838_26280
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Entry
N838_26280 CDS
T07019
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thip
Thiohalocapsa sp. PB-PSB1
Pathway
thip03030
DNA replication
thip03410
Base excision repair
thip03420
Nucleotide excision repair
thip03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N838_26280 (ligA)
03410 Base excision repair
N838_26280 (ligA)
03420 Nucleotide excision repair
N838_26280 (ligA)
03430 Mismatch repair
N838_26280 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thip03032
]
N838_26280 (ligA)
03400 DNA repair and recombination proteins [BR:
thip03400
]
N838_26280 (ligA)
Enzymes [BR:
thip01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N838_26280 (ligA)
DNA replication proteins [BR:
thip03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N838_26280 (ligA)
DNA repair and recombination proteins [BR:
thip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N838_26280 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N838_26280 (ligA)
MMR (mismatch excision repair)
DNA ligase
N838_26280 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N838_26280 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QQO56349
LinkDB
All DBs
Position
complement(6288343..6290706)
Genome browser
AA seq
787 aa
AA seq
DB search
MNEASAALAQRAETLRRALNHHNYRYYVLDDPEIPDAEYDRMMRELLELENSNPGLQTPD
SPSLRIGAAPSAAFAEIEHRLPMLSLTNALNEAEMRDFDRRVRQGLGVDMVLYSAEPKLD
GLAISLVYEHGLLLQAATRGDGYRGEDVTAQIRTVQCVPLRLWDDAKAGRVPELLEVRGE
VFLTHTRFQRINAQARAQGKKPFANPRNAAAGSLRQLDPRITAARRLSLFCYGLGALDDA
SVDADTFDSHSDSLARMAAWGLPVSPEQRRVSGIDACIAYHRDMSRRRDKLDYDIDGVVF
KVDRRTDQQRLGFVSRAPRWAIAFKFPAQEELTRVAAVEFRVGRTGTLTPVARLQPVQVG
GVIVANATLHNIDEVRRKDVRVGDTVFVRRAGDVIPEVVRVLPEHRPPGALPVKLPTHCP
VCSSDIVRAEGEAAARCSGGLFCAAQRKERIRHFASRRAMDIEGLGEKLIDHLVERGLVQ
DPSDLYRLSLDDYAGMDRMAEKSAQNLLDALQRSRHTTLPRFIYALGIREVGEATAVALA
DHFGDFNALMQAGMSDFIRCSGMRGIGPKIATALVDYLAKHPDVAADADLTAKTDLAAWL
TGLGIRGLNPNVAGRIVEKYPNIAALRAVDADALRGGEQSLIEGVGPIVAEHIVTFFAQM
HNREVIARLLDPKIGGIHWREGGNQAHADSNTCVSGLNAFAATKPHAGVMQPLAGKIFVI
TGKLSRPRDDIKAELRAMGAKVTGSVSRNTDYLLAGDDAGSKLEKAASLGVRVLTEIELA
RIINRDE
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagcaagcgcggcgctggcgcagcgggctgaaaccctgcgccgcgcgttgaac
caccataactatcgctattacgtactagatgatccggaaattccggatgccgagtacgac
cgcatgatgcgggagttgctggagctggaaaactcaaatcccgggctgcaaacaccggat
tcaccgagcctgcggatcggtgcagcaccatcagcggcatttgctgaaatcgaacatcga
ctgccgatgctgtcgctcacgaatgctctgaatgaggccgaaatgcgcgacttcgacaga
cgtgtacgacaagggctcggcgtcgatatggtgctctactctgcagagccgaagctcgat
gggcttgccatcagcctagtctacgaacatggcctgttgctgcaggccgcgacccgcggc
gatggctatcgcggtgaggatgtgacggcccagattcgcactgtccagtgcgtgcctcta
cggctatgggatgatgccaaagctggcagagttcccgagctgctcgaagttcgcggtgag
gtcttcctgacacatacccgctttcagagaatcaatgcccaggcgcgagcgcaaggcaaa
aagccattcgccaatccgcgcaatgctgctgccggtagtctgcgccaactcgacccgcgt
atcactgccgcgcgccgtctgagcttgttttgttacggactcggcgcgctggatgacgcg
agcgttgacgcagacactttcgatagccacagcgacagtctggctcgcatggccgcctgg
ggactgccggtatcacccgaacagcggcgcgtcagcggtatcgatgcctgtatcgcctat
catcgcgatatgagtcgccgccgcgacaagctcgactacgatatcgatggcgtcgtgttc
aaagtagaccgacgtaccgaccaacagcgattgggcttcgtctcgcgtgctccacgttgg
gcgattgcattcaagttcccggctcaggaggaactcaccagggttgccgcggttgagttc
cgggtcggacgtaccggcaccctaaccccggtcgcacgccttcagccggtgcaggtagga
ggtgtaatcgtcgccaacgcgacactgcataacatcgatgaggtccgacgcaaggacgtg
cgagtaggtgacacggtgttcgtacgccgggctggcgacgtgataccggaagtagtacgg
gtgcttccggaacacagaccgcctggcgcattgccggtgaaactgccaacccattgtccg
gtgtgtagttcggatatcgtgcgagcagagggtgaggcggcggcccgctgcagtggcggt
ctgttttgcgcagcccaacgtaaggagcggattcgccacttcgcatcacgccgcgccatg
gacatcgaggggcttggtgaaaaactgatcgaccacttggtggagcgcggcttggtgcag
gatccatccgacctctaccggcttagccttgacgactatgcgggtatggaccgcatggcc
gaaaaatccgcgcagaatctcttggatgcgctccagcgcagccgtcacactacactaccg
cgctttatttacgccctcggcattcgcgaggttggtgaggccacagctgttgccctagcc
gatcatttcggcgatttcaacgccttgatgcaggctgggatgtcggactttatacgctgt
agcggcatgcgcggcatcgggccgaaaatcgccaccgcattggtcgattatcttgccaag
caccccgatgtggcggctgatgctgacctgactgccaaaacagatcttgctgcctggctt
acaggacttggtatccgtggtctgaatccgaacgttgcgggacgcatcgtagagaagtat
ccgaatatcgcagcattgcgagcggtagacgcagatgccttgcgcggcggcgagcaaagc
ctgattgagggagttggcccgattgtggccgagcacattgttaccttcttcgcccagatg
cataaccgcgaggtgatcgctcggttgctcgatccgaaaattggggggattcattggcga
gagggggggaatcaagcgcatgccgactccaatacctgtgtcagcggactcaatgcattt
gctgctacaaaaccacatgccggagttatgcagccacttgccggcaagatcttcgtcatt
accggcaaactgagtcggccacgtgacgacatcaaggccgaattgcgagcgatgggagcc
aaggttaccggcagcgtttcacgcaacaccgattacctgctggccggtgatgacgcgggt
tcaaagctggaaaaggcggcgtcactcggcgtgcgggtgcttactgaaattgaattggcg
cgaatcatcaaccgggatgagtaa
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integrated database retrieval system
