Tarenaya hassleriana (spider flower): 104814077
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Entry
104814077 CDS
T04125
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104814077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104814077
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104814077
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104814077
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
Glyco_hydro_84_hel
Motif
Other DBs
NCBI-GeneID:
104814077
NCBI-ProteinID:
XP_010540231
LinkDB
All DBs
Position
Unknown
AA seq
2409 aa
AA seq
DB search
MVPPSSSIATHVRFLLESLSDSDVDSAIQELREFVDRGVEASVPVLATCLGCLTFKKSQV
NRLQLEKVVSPVFKHAMKKPNFGTTLSQALKDVEVTEDFVDDLANALCLSTSEKIGFGLA
LSDLERSDARTSGRNFCATEIEKLCANPVQMESTQQIHDIILFICQSEDLSKHLDSFLQI
LSSAQSRDELRVVLTPILSEDVPGADIFRSMDFLNDTAENDFDDVLAEIEKEISVGDLIE
ELGYGFTADAGQCKEILSRFLPLTEATISRILGTVARSYAGLEDNHNTFSTFSLALDCCT
STELPELRSWNVEILIETIRQLAPGTNWIRVIENLDYDEFYIPNMEAFSFFMLVFRNAWK
DPFPLHAICSSVWKNVEGQLSFLKHAISAQAEVFSFVHSARKLAYVDNGHGHDQQLVLAN
HAWLSLDLLDVLCQLAERGHAALIRSLLDYPLTHCPRTLLLGMAHVKTAYNLIQRDVASA
VLPMILKNTPDSGFILNLWHLNAELVLWGILDAQNLESEGLMRLMETCHELKILSFVLES
VPFSRGIRLAILASQRGFLDIEKWLSSCLYMYKNVFFEECLKFIKDIHFGESKDFSVKHF
HPSGTIFNLYLEATSSVLKVLKAHANVISSPQLSEEIEKVHAAILDCNLELQNGGALDSP
SSDVDGDDVEAEANAYFHQMFSGQLSVEAMVQMLARYKDSPVEREKAIFECMIGNLFEEY
RFFPKYPERQLKIAAILFGSVIKHQLIASITLGIALRGVLDALRKPADSKMFLFGTKALE
QFVNRLIELPQYCNHILQISHLRGTHPELVAVIEQALARISSGHSEADASVNHPISPLSF
PGNGELSGSGIGQSVLQLTSSIHHQQRNEVSVDDRNKVPALASNDVKPLLPSSVTTSGDV
SVIQKNPVTGLATSSTSAGFARSSRGATSTRFGSALNIETLVAAAEKREQPIEAAPSEVQ
DKISFIINNISAANMESKAKEFAEVLPQQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKV
NSKALNKEIVQATYENCKVLLSSDLIKSSSEERSLLKNLGSWLGKLTIGRNHVLLAREID
PKSLIVEAYEKGLMIAVIPFTSKVLEPCHNSIAYQPPNPWTMGILGLLAEIYSMPNLKMN
LKFDIEVLFKNLGVDMKEVAPTSLLKDRKRETDGNPDFSSKDLGVAQVSQPQMLPEAKSG
AFSPLNQVELALDVTSSPNTGNHSKLLSQYPAPLQISAGTSMDDEKVSALSLSDKLPSAQ
GLFQSTPSPSAFSINQLSAAIPNIGNHVIINQKLSAYGLHFPFQRAVPIAMDRAIKDIVS
GIVQRSVCIACQTTKELVLKDYALEPDETRIYNAAHLMVASLAGSLAHVTCKEPLRSSIS
NHLLSSLQGVNITSEVLEQIVQLVTNDNLDLGCAAIEQAATEKAIQTIDGDIAQQLLLRR
KHRDGVGSSFFDPNMLSQNSVSVIPESLRPKPGHLSLSQQRVYEDFVQLPWQKQSTQSSH
GLSAVPSSSGEVGIGGGYGSLSGKQSSGISSSAANVGMDMVSRSSDISVEGFESSSVAPP
SVPSVQVGPASDAATLLYSKPLSSSESYPTESADGVSKETGVSLQTLSSSATMERLGSSI
TQPSLSTRDALDKYQIVTQKLEDLVASNSGDSEIQAVVSEVPEIILRCVSRDEAALAVAQ
KAFKALYENATSSLHVSANLGILAAVRDVCKRVVKELTSWVLYSDEERKLNKDITVGLIR
SELLNLAEYNVHMAKHLDGGRNSMLMESATDFAITLLQSLVSEESSVISELHSLVDALAK
LAAKPGSPESLQHLIDMIRNPVASSASLSSAAIGIENGARQSKDEKTTANATTTGDESTI
MELVERDPDGFRGQVSLLFENWYKICELPGANDAACTRYVIQLHQSGLLKGDDLTESFFR
ILTDLSVAHCISSEVISSAVLQTPQQSQGLSFLAIDIYAKLVFSILKNFPDQESSGKFFL
LSKILAVTVRHIQKNAEEKKTSFNPRPYFRLFINWLLDFCSLDPATDGSSFQILTAFANA
FHALQPFKVPAFSFAWLELVSHRSFMPKLLTVNNQKGWPYVQRLLVDLLQFLEPFLRNAE
LGGPVHVLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSSFPRNMRLP
DPSTPNLKIDLLPEIVDPPRILSEVDAALKAKQMKNDVDEYLMMRPLNSPFLNELKERVL
LPITEASSAGTRYNVPLINSLVLYVGMQAIQQLQAGASQAQSNANVAALQIFKYLSSELD
AEGRYLFLNAIANQLRYPNNHTHYFSFIMLYLFHESDEEIIQEQITRVLLERLIVNRPHP
WGLLITFIELIRNPRYNFWKQGFIRCAPEIEKLFESVARSCGGGSSGGGGALKPVDEAMV
TGWVSDSTH
NT seq
7230 nt
NT seq
+upstream
nt +downstream
nt
atggtgccgccttcgtcctcgatcgcgactcatgttcgcttcttgctggagagcttgagc
gattcggacgttgactccgccatccaagagcttcgcgagtttgttgatcgtggagttgag
gctagtgttcctgttctggcgacctgcttaggctgcttgacctttaagaaaagccaggtg
aataggttgcagctcgagaaagtggtatcacctgtttttaaacatgccatgaagaagcca
aatttcggtaccactctctctcaggcgctaaaagatgttgaggtcactgaagattttgtg
gatgatttggcaaatgcattgtgcttgtctacatctgagaaaattggttttggtcttgcc
ttgtctgatcttgaaagatctgatgcaagaacaagtgggcggaacttttgtgccactgag
attgagaagctgtgtgccaatcctgtccagatggagtcgactcaacaaattcatgatatt
attttgtttatttgtcaatctgaggatctctccaaacatttggattcctttttgcaaata
ttgtcttctgctcaatcaagagatgaactccgcgttgtgcttactcccatcctttcagaa
gatgttcccggagctgatattttcaggagcatggattttctcaatgatactgcggaaaat
gactttgatgatgtcttagctgaaattgaaaaggagatcagcgtgggtgatctcatagaa
gaattaggatatggattcactgctgatgccggacaatgcaaagagatcttgtctcgcttc
ttacctttaacagaggctactatctctagaatccttggaacagtggcccgtagctatgct
ggtcttgaagataaccataacaccttttcaacttttagtttggcccttgactgctgtacc
tcaactgaacttcctgagcttaggtcgtggaatgtagagatcctcattgaaacaatcaga
cagctcgctcctggcacaaactggattcgagtaatagagaatctggattatgatgaattt
tacatccctaatatggaggctttctctttcttcatgttggtgtttcgaaatgcatggaag
gatccatttcctcttcatgccatatgcagttctgtctggaaaaatgtggaagggcagtta
tcgtttcttaagcatgctatatctgcacaggcagaagtattttcctttgtgcattctgca
aggaagctggcatatgttgataatgggcacggccatgatcagcagttagtacttgccaat
cacgcctggttgtctcttgacctgttagatgtgctatgccaactggctgagaggggacat
gctgctttaattcgttcattgcttgactatcctcttacacattgtccgagaacattgctt
cttggaatggctcatgtcaaaactgcttataatcttattcagcgagacgtggcttctgct
gttcttcccatgatattaaagaatacgccggatagtggtttcatacttaatctttggcat
ctaaatgctgaacttgtactttgggggattttagatgcccaaaatcttgaatcagaaggc
ttgatgagattaatggaaacctgccacgaactgaagattctctcatttgttttagagtca
gttccattctcacgtggcattagattggcgatccttgcttcacagagaggtttcttggac
attgagaaatggttgtccagctgtttatatatgtacaagaatgttttctttgaggagtgc
ctcaagtttatcaaggacattcattttggtgaatcgaaggatttttcagtcaaacatttc
catccctctggtactatattcaatctttatctggaggcgacatcttccgttttgaaggtt
cttaaagctcatgctaatgtaatttcttcacctcaactgtctgaagaaatcgagaaggtc
catgcggcaattttggattgtaatttggaactgcagaatggtggggctttggattcacca
tcctctgatgtagatggggatgatgttgaggctgaagcaaatgcttatttccatcaaatg
ttttctggtcagttgagtgtcgaagcaatggtccaaatgcttgcacgatataaggactcg
ccagttgaaagggaaaaagcaatttttgaatgcatgattggaaatctttttgaagaatat
cgttttttccccaagtatcctgagagacagctaaaaatagcagctatcctcttcggttcg
gttatcaagcaccagcttatagcttctataacactgggcattgctcttcgtggagtactg
gatgcattgcgtaaacctgctgattcaaaaatgtttttatttggaaccaaagctctggag
cagtttgtgaatcgtctcattgagttgcctcagtactgcaaccatattttgcaaatatct
catctgcgcggtactcatccggagctagttgctgttattgaacaagcccttgcacggata
tcatctggtcattcagaagcagatgcctcagttaatcaccctatttccccattgtctttc
cctggaaatggcgagttgagtggttctggaattggccaatctgtattgcagcttacttct
tccatacatcatcaacagagaaatgaagtatctgttgatgatcgtaacaaggtgcctgcc
ttggcatcaaatgatgtgaagccgcttctgccatcttcagtgactacttcaggagatgtt
tcagtcattcagaagaacccagtcactggtttagctacttcatcaacttcagctggcttt
gcccgttcatctcgtggagccacttcaacaaggtttggttctgccttgaacatagaaacc
ctagtcgctgcagcggagaaacgagagcaaccaatagaggctgcaccttcagaggttcag
gacaaaatatcttttataattaataatatctcagcagcaaacatggaatcgaaagccaaa
gaattcgcagaagtattgcctcagcagtattatccctggtttgcacagtatatggtcatg
aaaagagcgagtatcgaaccaaattttcatgacttgtacttaaagtttctggataaagtt
aattcgaaggccttgaacaaggagattgttcaagctacctatgagaattgcaaggttctc
ttaagttcagatctcataaagtcgagttcagaagagcgatctttactaaaaaatttaggc
agctggcttggaaagttgaccattggaaggaatcatgttttgttggcccgagaaatagac
ccaaaatctttgatagttgaggcatatgaaaaggggttgatgatcgcagtcattccattc
acttctaaggtgttggagccctgccataacagtattgcatatcaacctccaaacccatgg
actatgggtattcttgggcttcttgctgagatctactcaatgccaaacctgaaaatgaat
cttaaatttgacatagaggtgttatttaaaaaccttggcgttgatatgaaagaagtagca
ccgacttctctattgaaggacagaaagagagaaacagatgggaatcctgatttcagtagc
aaagatctcggtgtggcacaagtatctcagccacagatgcttcctgaagctaaatctgga
gccttttctccactcaaccaggtcgagctagctcttgatgttacaagttcacctaacaca
ggcaaccattcaaagttattatcacagtatccagctcctcttcagatttctgcgggcact
tcgatggatgatgagaaagtctctgcgctaagcttatctgataagcttccgtcagcccaa
ggactgttccagtcaactccttccccttctgcattttctattaatcagctctcagcagca
atcccaaacattggaaatcatgttattatcaatcagaagttaagtgcgtatggtctgcac
tttccttttcagagagcggtgcccattgctatggacagagctatcaaggatattgtgtct
ggtattgtccagcgtagtgtttgtattgcatgccagacaacaaaagagctggttttgaag
gattatgcattggaaccagatgagacaagaatatacaatgcagcccatttgatggttgct
agtttagctgggagtttggctcatgtgacctgcaaggaacccttgcgcagttcaatatcg
aatcatctactgagttcgcttcagggtgtaaatattacaagtgaagttctagaacaaatt
gtgcaacttgtcactaatgacaaccttgaccttggttgtgctgccattgaacaggcggct
acagaaaaggcaatacaaactattgatggtgacattgctcagcaattattgttgaggaga
aagcatagggatggtgttggttcctcattttttgatccaaacatgttgtcacaaaattct
gttagcgtcatacctgaatccctccgcccaaaacctggtcacctgtccctttctcagcag
cgggtttatgaggattttgttcagcttccgtggcaaaagcagtctacccaaagttcacat
ggtttatctgctgttcctagttcatctggtgaagttggcattggtggtggttatggttca
ctgtccggaaaacaatcttctggcatttcatctagtgctgcaaacgtgggtatggatatg
gtctctcgatcatcggatatttctgtggaggggtttgaatctagttcagttgcacctccg
agtgtccctagcgttcaagttggtccagctagtgatgcagccacccttctgtattctaaa
cccctttcatcctccgagtcatatccaacagaatccgctgatggagtaagtaaggaaacc
ggggtatccttgcagactttgagctcatctgctaccatggagcgacttggtagtagcatt
acacagccttcgctttccacgagagatgcactggataagtaccagattgttactcagaag
ttggaggacttagtagccagtaactctggagattctgaaattcaggcagtagtttctgag
gttcccgagatcatcctccgatgtgtgagcagagacgaagctgccttggctgtcgctcag
aaagctttcaaggctctttatgagaatgctacgagcagccttcatgtcagtgctaaccta
ggaattctcgcagctgtccgtgatgtctgcaaacgtgttgtcaaggagctcacaagctgg
gtgttatattcagatgaggagcggaaactcaacaaagatattactgttggtcttatccga
agtgaattacttaacctggcagagtacaatgtccacatggcgaaacatcttgatgggggg
cgaaacagtatgttgatggagagtgcaactgactttgccattactcttctccaatccttg
gtttctgaggagtcgagtgtcatttctgagcttcatagtcttgttgatgcactggcaaag
cttgctgcaaaaccggggtctccagaatcattgcaacatctgattgacatgatacgaaac
ccagttgctagttctgctagtctctcaagtgctgcaatcggcattgagaacggtgctaga
caatcaaaagatgagaagactacggccaatgccactactactggagatgagagtactatc
atggaacttgtggaacgagatcctgatggtttccgaggacaggtatccttgcttttcgaa
aattggtataagatatgcgaacttcctggtgcaaacgatgctgcttgtactcgatatgtc
atacaattgcatcagagtggactgctaaagggggatgatctaactgagagttttttccgc
atacttacggacctttctgttgctcattgcatatcttccgaagtaattagttctgctgtg
ctgcaaactccgcagcaatcccagggtctatcattcctagcgatcgatatttatgcaaaa
cttgttttttcgatcttgaagaatttccctgaccaggaatctagtggcaagttcttcctt
ctctcgaagattctggctgtaactgtgagacatatccaaaaaaatgcagaggagaagaag
acatcttttaatccaagaccttatttcagactgttcatcaactggcttctggacttctgt
tcactggaccctgcgactgatggttcaagctttcagattctcacagcttttgccaatgca
tttcacgcattgcaaccctttaaagttcctgcctttagctttgcttggctagagctagtc
agtcacagaagcttcatgcccaaactactcacagtaaacaatcagaagggttggccctat
gttcagcgcctgcttgtggacctgctccagtttcttgagccatttttgagaaatgctgaa
ctaggagggccggttcacgttttgtataagggaacactgagagtgttgctggtgctgctt
catgacttcccagagttcctttgcgattatcattttactttctgtgatgtgattccccca
agttgcatacaaatgcgcaatataattctcagttcttttccacgaaacatgaggcttcca
gatccatctactccaaacttaaagattgatttgttgcctgagatagttgatcctccccgt
attctttctgaggtcgatgctgctcttaaagcaaagcaaatgaagaatgacgtggatgag
tatctcatgatgaggccgctgaactctcctttcctaaatgaactgaaggagagggtgctt
ctcccaattactgaagccagttcagctggtactcgttacaacgtaccattgatcaactcg
cttgttctctatgttggaatgcaggctattcaacagctacaggcaggtgcatctcaggct
caatcaaatgcaaatgttgcagccttgcagatattcaagtatttaagctctgaacttgat
gcggaaggacgctacctcttcctgaatgcaattgctaaccagcttcgttatccaaacaac
cacacgcattacttttccttcatcatgctctatctgtttcatgaatcagacgaggaaatc
attcaggagcaaataacaagagtgttgctggaacggctaatagtaaaccggcctcatcca
tggggactactcatcacattcattgagctcatcagaaatccaaggtacaacttctggaaa
caagggttcataaggtgtgctccagagatagagaaactgtttgaatcggtggccagatcc
tgcggtggcggcagcagcggcggcggcggcgccctgaagccagtcgacgaagccatggtt
acgggttgggtatctgacagcacccactaa
DBGET
integrated database retrieval system
