Thermosynechococcus sp. NK55: NK55_10860
Help
Entry
NK55_10860 CDS
T02977
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
thn
Thermosynechococcus sp. NK55
Pathway
thn03030
DNA replication
thn03410
Base excision repair
thn03420
Nucleotide excision repair
thn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NK55_10860 (ligA)
03410 Base excision repair
NK55_10860 (ligA)
03420 Nucleotide excision repair
NK55_10860 (ligA)
03430 Mismatch repair
NK55_10860 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thn03032
]
NK55_10860 (ligA)
03400 DNA repair and recombination proteins [BR:
thn03400
]
NK55_10860 (ligA)
Enzymes [BR:
thn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NK55_10860 (ligA)
DNA replication proteins [BR:
thn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NK55_10860 (ligA)
DNA repair and recombination proteins [BR:
thn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NK55_10860 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NK55_10860 (ligA)
MMR (mismatch excision repair)
DNA ligase
NK55_10860 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NK55_10860 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
PTCB-BRCT
DNA_ligase_ZBD
BRCT_2
HHH
HHH_3
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AHB89411
UniProt:
V5V7S9
LinkDB
All DBs
Position
complement(2271531..2273597)
Genome browser
AA seq
688 aa
AA seq
DB search
MVLKEPPAERIQQLRRLLQRASYAYYALDQPIMEDEVYDQLYRELQELEAAHPEYITPDS
PTQRIGEAPVSQFESVSHRIPLYSLENAFTFADMVAWQERWQRYWRTLRQEEPLPPAEYV
CELKMDGVALALSYENGLLVRGATRGDGQRGEDITSNVRTIRTIPLRLALENPPPVVEVR
GEAFLPLERFHQLNQERQAQGESPFANPRNAAAGTLRQLDPRIVAQRQLDFFAYALHLPE
GGSVPLGENQAGEPQSQRQVLYALQHLGFRVNPHNADCPDLEAVKAYYDYWQTARHQLPY
LTDGIVVKLNDLELQQALGFTQKFPRGSIAWKYEPEQAITDVLGITVQVGRTGALTPVAE
LVPVQLAGTTVSRATLHNADYITELDLHIGDKVVIHKAGEIIPEIVRVFPELRPPTAQPF
TMPTACPECHQPVVRPANEAVSRCVNPRCPAIVRGQILHWASRDALDIQGLGEKLVQQLV
TKELVRTPADLYRLTAAQLLSLERMGQKSADKLLQAIADSKQQPCTVLYGLGIRHVGSVN
AQMLAARFKSVEELATATVADLCGVYGIGEEIAQAIQEWFQDPDHQALIADLKGLGLQLA
AALPPAPTTPTTEKSLDGKRFVITGTLATLTREQAKALIQKHGGQVSESVSRQTDYLVVG
EKAGSKLRRAQELGIPCINETELIEMCR
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggtcttgaaggaacccccagctgaacggattcaacaactgcggcgcctgcttcagcgt
gcgagctacgcctactacgccctggatcagccgatcatggaagatgaggtctatgaccaa
ctctatcgggagcttcaggaactagaggccgctcatcccgagtacattacccccgacagt
cctacccaacggatcggtgaagcgcctgtcagtcaattcgagagtgtcagccatcgcatt
cccctctatagccttgaaaatgcctttacctttgccgatatggtggcgtggcaggaacgc
tggcagcgctattggcgcaccctacggcaagaggaaccactccccccagccgaatatgtc
tgcgaactcaaaatggatggtgtggctcttgccttaagctatgaaaacggtttacttgtg
cggggagcaacgcggggcgatggccaacgcggtgaggatattaccagcaatgtgcgcaca
attcgcaccattcccctgcgattagcccttgaaaatccaccccctgtcgttgaagttcgc
ggggaagcctttttgcctttggagcgattccatcaactaaaccaagaacgccaagcccag
ggggagtccccctttgccaatccccgcaatgccgcagccggtaccctgcgtcaactggac
ccccgcattgttgcccaacgccaattagacttctttgcctatgccctgcatttgcctgaa
gggggtagcgttcccttgggggagaaccaagcaggggaacctcaatcgcagcggcaagtg
ctctatgcgctgcaacaccttggctttcgggtcaatccccacaatgccgactgccctgac
ctagaggccgtgaaagcctactatgattactggcaaaccgcacgccatcaactgccctat
ctgaccgatggcattgtggtcaagctcaatgacttagagctgcaacaggcccttgggttt
acgcaaaagtttccccgaggttctattgcttggaagtacgaaccggagcaggctattacg
gatgtgctgggaattacggttcaggtgggacgcacaggggcccttactcccgtggctgaa
ctggtgccggtgcaattagcaggtactactgtatcacgggcaacgttgcacaatgcagac
tacattactgaattggatttgcacattggcgataaggtcgtgatccacaaagcaggggaa
atcattccagagattgtgcgggtgtttcctgaattgcgaccgccaacggctcaacccttt
acaatgcccactgcttgtcccgaatgccaccagccagttgtgcgtcctgccaatgaggcg
gtgagtcgctgtgtcaatcctcggtgtccagcgatcgtgcggggccagatcctgcactgg
gcaagtcgggatgccctggatattcaaggcttaggggaaaagctggtacagcaattggtg
acgaaggaattggtgcgcacccctgcggatctctatcgtctgacggcagcacaactgttg
agcctcgagcgcatgggtcaaaagtccgctgataaattgttgcaggcgatcgccgactcg
aaacaacaaccgtgcacggtgctctatggcttaggcattcgccatgtggggagtgtcaat
gcccaaatgctggccgctcgattcaagtctgttgaggaactagccacggccaccgtcgct
gatctgtgtggggtctatggcattggtgaggaaattgcccaagcgattcaggagtggttc
caagaccctgatcaccaggctctaattgctgatctgaaggggttgggactgcaactggct
gcagcacttccgcctgcgccaactaccccgactacagagaaatccctcgatggcaaacgc
tttgtgattaccggcaccctagccaccctcacccgtgagcaagcaaaagccctgatccaa
aagcacggcggccaagtgagtgagagtgtaagtcggcaaacggattatctggtggtgggc
gaaaaagcagggagtaaattgcgacgtgctcaagaattgggcatcccctgcatcaatgaa
acagaacttatagaaatgtgtcgttag
DBGET
integrated database retrieval system