Candidatus Thioglobus autotrophicus: SP60_01330
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Entry
SP60_01330 CDS
T04079
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
tho
Candidatus Thioglobus autotrophicus
Pathway
tho03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SP60_01330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tho03400
]
SP60_01330
Enzymes [BR:
tho01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SP60_01330
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SP60_01330
DNA repair and recombination proteins [BR:
tho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SP60_01330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
OrfB_Zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
ALE52003
UniProt:
A0A0M5LEM5
LinkDB
All DBs
Position
255641..256450
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AA seq
269 aa
AA seq
DB search
MPELPEVETTKNGLLPLIKNQRVTCAVRHRANLRWEIPKALKTILAGEVVNGIDRRGKYL
LIRFDVGTLIIHLGMSGSIKVVDSSEALLKHDHFELVFAHDKSMRLNDPRRFGAVLFSKD
GTHPLLDNLGVEPLTSDFSETYLYVGSRKKVQNIKAFIMDSKVVVGVGNIYACESLFVSG
IDPTRAAGSISMARYKKLTQNIKQILECAIKAGGTTLQDFSQVDGSPGYFAQTLNVYGCE
NKPCHTCGGKIQRIIQNQRSTFYCKNCQS
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactacctgaagttgaaactaccaaaaatggtttactgcccctaattaaaaat
cagcgcgtgacttgcgctgttcgccatcgggctaatttgcgctgggaaatccctaaagcg
cttaaaactatcctagctggcgaagtggttaatggcattgacagacgtggtaagtattta
cttattcgctttgatgtggggacgctgattattcatttgggcatgagcggctctattaaa
gtggtggatagtagcgaagcattgcttaagcacgatcatttcgagctggtgtttgcacac
gacaaaagtatgcgtctgaatgatccgcggcgttttggtgcggtgctattttcaaaagat
ggcacgcatccactgcttgataatttaggggtggagccactgacctctgattttagcgaa
acatacctatatgtagggtctcgcaaaaaagtgcaaaatattaaggcctttattatggat
agcaaagtggttgtaggtgtgggcaatatttatgcctgcgagagtttgtttgtctcgggt
attgacccaacacgtgcggcgggcagtatttctatggcgcgttataaaaagctgacccaa
aatattaaacaaattttagagtgtgcgattaaagctggtggcacaactttgcaagatttt
tcacaggtggatggatcgcctggatatttcgcacagactttaaacgtgtatgggtgtgaa
aacaagccgtgccatacttgtggtggtaaaatacaacgaatcatccaaaatcaacgttca
actttttattgtaaaaactgccaatcatga
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