Thioploca ingrica: THII_3428
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Entry
THII_3428 CDS
T03616
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tig
Thioploca ingrica
Pathway
tig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THII_3428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tig03019
]
THII_3428
03009 Ribosome biogenesis [BR:
tig03009
]
THII_3428
Enzymes [BR:
tig01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
THII_3428
Messenger RNA biogenesis [BR:
tig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
THII_3428
Ribosome biogenesis [BR:
tig03009
]
Prokaryotic type
rRNA processing factors
THII_3428
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF3287
Motif
Other DBs
NCBI-ProteinID:
BAP57725
UniProt:
A0A090AQ36
LinkDB
All DBs
Position
complement(4147347..4149431)
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AA seq
694 aa
AA seq
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MKRILINATQPEELRVAMVDGQKLHNFDIETTGRRQTKSNIYKGKITRLEPSLEAAFVDF
GADRHGFLPLKDINRSYFQPQLLDKLEDIEPTTEETDIPLRASIKDVLKEGQEIIIQIDK
EERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGEERSEAREALSTLEIPPGMGL
ILRTAGVSKTAEELQWDLEYLLQLWQAIEASAQQQSAPFLIYQESNIIIRAIRDYLREDI
SEILVDNQEIHEEASEFMQRVMPQHLSKVKLYQDKVPLFTRYQIESQIESAFQREVKLPS
GGAIVLDHTEALLSIDINSARATKGGDIEETALQTNLEAVEEIARQLRLRDSGGLVVIDF
IDMLSHKHQREVENRMKEALRMDRARVQVGRISRFGLLEMSRQRLRPSLGESSHTVCPRC
SGQGTIRAVESLSLSILRLLEEEAMKEKTIKIIAQVPVVVATYLLNDKRYTIREIENRQK
ISIIIVPDPNMETPRYEVQRVRQDDKNEFINNKASYNLITPPPEPVLDQYKAPTQPEIHE
EPAVKGVIHTNPPMPHFKSAGQQISLIRRFWNRLFRKDSEEKTQVPSTELSNPSRLGRPT
SNRSINQRRFRHTPRTRNPMPAIELNSNSTEAEIARRTDNGRNSTYVRRGRRRKRPEMGN
LETTSVSTAVEMTNPNSGNEVAEVKENRLKEEIH
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatactcattaacgccacccaaccagaagaattaagggtggctatggttgat
ggccaaaaattacataattttgatattgaaactaccggacgtaggcaaactaaatcgaat
atttataaaggtaaaattactcgcttagaacccagtttagaagcggcttttgttgatttt
ggggcggatcgacacggttttttaccactgaaagatattaatcgaagttattttcagccc
cagttgttggataaattagaggatattgaacccactacagaagaaaccgacatacccctt
cgtgcaagcattaaggatgtcttgaaagaaggacaagaaatcattatccaaatcgataaa
gaagaacgtggtaataaaggtgctgctttaacgacttttattagtttagctggacgttat
ttagtcctgatgccgaataatccgagagccggtggggtatcacgtcggattgaaggagag
gagcgtagtgaagcgcgcgaagccttaagtactttagaaataccgccaggcatgggttta
atccttcgtactgccggtgtgagtaaaaccgctgaagaactacaatgggatttagaatat
ctcttgcagttatggcaagcaatcgaagcctccgctcaacaacaatctgccccttttctt
atttatcaggaaagtaatattattatccgtgctattcgagattacttgcgggaagatatt
agtgaaattttggttgataatcaagagattcatgaagaagcttctgaattcatgcaacgg
gtcatgccgcaacatctcagtaaagtgaaattatatcaagataaggtaccactttttacc
cgctaccaaattgaaagccaaatcgaatccgcttttcaacgtgaagtcaaattaccttcg
ggtggtgccattgtccttgatcatactgaagcactcttgtctattgatattaactctgct
cgcgccaccaaaggcggtgatatagaagaaacggctctacaaactaaccttgaagcagtg
gaggaaattgctcggcaacttcgcctccgtgactctggaggactcgtggttattgatttt
attgatatgctgagtcacaaacatcaacgtgaagttgaaaaccgcatgaaagaagccttg
agaatggatagggcacgagtccaagtaggacgtatttcgcgttttggattgttagaaatg
tcacggcaacgactcagaccctctctcggtgaatccagtcataccgtttgtccacgttgt
agcgggcaagggactattcgagcggtggaatctttatcgctttctattttgcgattactg
gaagaagaagcgatgaaagaaaaaacgattaaaattattgctcaagtcccggtagtggta
gcgacttatttactcaatgacaagcgttatacgatacgagaaatcgaaaaccgccaaaaa
atcagtattataattgttcctgatcccaatatggaaaccccacgctatgaagtacaacgg
gtgcgacaggatgacaaaaacgaatttatcaacaacaaagcgagttacaatttaattacg
ccaccgcctgaaccggtgcttgatcagtataaagcacccactcaaccagaaattcatgaa
gaaccggctgtaaaaggagtcatacacactaaccccccgatgcctcattttaaatcggct
ggacaacaaattagtttgataagacgtttctggaatcgattatttcgcaaagatagcgag
gagaaaactcaagttccctctaccgaattatccaacccatctcgcctgggtcgacccact
agtaaccgctccattaaccaaagacgttttcgccatacgcctagaacacgcaatccaatg
ccagcgattgagttgaatagtaattcaaccgaagccgaaatagccagaagaacagacaat
ggtcgaaattcgacttatgtgcgtcgtggtcgccgtcgtaaacgtcctgaaatgggaaac
ctagaaaccacttcagtctctacagcggtagaaatgactaaccccaatagtggcaacgaa
gtggctgaagtgaaagaaaatcgtcttaaggaagaaattcattag
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