Tuwongella immobilis: GMBLW1_46690
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Entry
GMBLW1_46690 CDS
T06428
Name
(GenBank) dead deah box helicase : DEAD/DEAH box helicase domain protein OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_1620 PE=3 SV=1: DEAD: Helicase_C
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
tim
Tuwongella immobilis
Pathway
tim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GMBLW1_46690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tim03019
]
GMBLW1_46690
03009 Ribosome biogenesis [BR:
tim03009
]
GMBLW1_46690
Messenger RNA biogenesis [BR:
tim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GMBLW1_46690
Ribosome biogenesis [BR:
tim03009
]
Prokaryotic type
rRNA helicases
GMBLW1_46690
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
VTS06409
UniProt:
A0A6C2YT05
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All DBs
Position
1:5074416..5075810
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AA seq
464 aa
AA seq
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MSDEKSLEPEASLPPEPLPAGTTPPGEVVPENPVLESTSEPALESAADELASEPSAPETV
EYASLPLHPELHASIARLGYVKATPIQSAVIPVALQGKDVIGQAQTGTGKTAAFLIPFLN
RWREDVHPGPQAIILAPTRELVAQVAEEGKKLAPSPKCKIVPIYGGAGMRSQVDALRAGC
AVVVGSPGRVLDHLSRGTLKLDQVWYAVLDEADRMLDIGFRPDIEKILRKCPSDRQTLLM
SATMSATVLRLVHRYMVEPTHLSMTPTTLTVDRIRQSFFTVDESRKFELLVRVILRERPR
QCIIFCQRKKSSDRLHRDLSRIFESVAVMHGDLAQSQRERIMKRFRTRHIRCLIATDVVS
RGIDVSGISHIFNYDLPDDLENYVHRIGRTGRMGKDGIAISFVRPDQGKQLTSIEASINR
LISEDRIPGYVAFDRPPDAPAPASPPPPPAPRFGGRGRRYSKRI
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
ttgtcggacgaaaaatcattggaacccgaagcgagcctaccaccggaaccgcttcctgcc
ggcaccactccaccgggagaagtcgttcccgaaaatcccgtattggaatccacctcggaa
cccgccttggaatctgccgctgacgaactcgccagcgaaccatcggcccccgaaaccgtg
gagtatgcctcgcttccgcttcaccccgagctgcacgcttccattgcccggctcggctat
gtgaaggcgaccccgattcaaagtgctgtcatcccggttgcgttgcaaggcaaagacgtc
atcggccaagcccaaaccggcaccggaaaaaccgccgcgttcttaattccgtttctcaat
cgctggcgagaagatgttcaccccgggccgcaagccatcattctcgcccccactcgcgag
ttagtcgcccaagttgccgaagaaggcaagaagctcgctcccagccccaagtgcaagatt
gtccccatctacggcggtgccgggatgcggtcgcaagtcgatgccctaagagcaggttgc
gccgttgtcgtcggtagccccggtcgcgtcttggaccacctcagccgtggcacgctcaaa
ctcgaccaagtctggtacgccgtgctcgatgaagccgaccgcatgctggacatcggcttc
cgacccgacatcgaaaagattcttcgcaaatgccccagtgatcgtcagacactgctcatg
tcggcgaccatgtcggccaccgtgctgcgcttggtgcatcgctacatggtggaaccgacc
cacctgagcatgaccccgaccacgctgaccgtggatcgcattcggcaatcgttcttcacg
gtagacgaaagtcgcaaattcgaactattggtgcgcgtgattctccgcgaacgcccgcgc
cagtgcatcatcttctgccaacggaagaaatcgtcggaccgattgcaccgcgatctgtct
cgaatcttcgaatcggtggcggtcatgcacggcgacttggcccaaagccaacgcgaacga
atcatgaagcgattccgcacccgccatattcgctgcctgattgccaccgacgtggtgagc
cgtggcatcgacgtgtccggcatctcgcacatcttcaattatgatctgccggatgacctg
gaaaactacgttcaccgcattggccgaaccgggcggatgggcaaagacggcatcgccatc
agtttcgtgcggcccgatcaaggcaaacaactcacgagtatcgaagcctcgattaatcgt
ctgattagcgaagatcgaattccagggtatgtcgccttcgatcgtccgccggatgcccca
gctcctgcgtcgccgccgccgccgcccgcgccgcgcttcggtggccgaggccgacggtac
agcaaacgcatctaa
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