Thiomicrolovo immobilis: WCX72_01965
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Entry
WCX72_01965 CDS
T11235
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
timm Thiomicrolovo immobilis
Pathway
timm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
timm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WCX72_01965 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
timm03021
]
WCX72_01965 (rpoB)
03400 DNA repair and recombination proteins [BR:
timm03400
]
WCX72_01965 (rpoB)
Enzymes [BR:
timm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WCX72_01965 (rpoB)
Transcription machinery [BR:
timm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WCX72_01965 (rpoB)
DNA repair and recombination proteins [BR:
timm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WCX72_01965 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
XAU05764
LinkDB
All DBs
Position
369210..373382
Genome browser
AA seq
1390 aa
AA seq
DB search
MLNTLYSGNRLRVDFAKTPQQIDVPNLLQLQLSSYENFLMMDQKDRAESGLERVFQSVFP
IHDAQNRITLEYMGSEIGTPKYTVRECMERGLTYSVSLRMKTRLVLWERDENTKEKKGVS
EIKEQSIFIRDIPLMTDRTSFVINGVERVVVNQLHRSPGVIFKEEEATTAGNKLIYTGQI
IPDRGSWLYFEYDPKDILYMRINKRRKVPVTIMFRALGYSKQDILKLFYPLQTIEIVDNA
FLMPFEPEQFDGRLEFDLRDESGEVLVAAGKRLSAKKAQKMIETGTTRVQYPVEVLCERH
LAEPIINPETGEVLFDTMTSIDEMKLKKIAEAGIGSFVIANDLASGVDSSIINAFLADAD
SLKLLKQTEELEDENDLAAIRIYKVMRPGEPVTKEAAKAFVNQLFFDPERYDLTRVGRMK
MNHKLGQEIPEYVTVLTNEDIINTVKYVIKVKNGKGHIDDRDHLGNRRIRSIGELLGNEL
HNGLIKMQKAIKDKLSTMSGPMAELMPHDLINSKMITSTIMEFFSGGQLSQFMDQTNPLS
EVTHKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLATYAKVN
EHGFIEAPYNVVKDGIVQYGDENVIYLTATQEEGMTIAAASNKVDANGKFAEELIELRKD
GEIILGSPTDADYMDLSSHMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLKPSAPM
VGTGIEKLVARDAWESVKAKRAGVVEKIDARHIYVISKDEEGAVIDYYPLQKNLRTNQNT
TFGQKPIVKVGEKVEAGQVIADGPNMDQGELALGQNALVAFMPWNGYNFEDAIVISEKLI
REDAYTSVHIYEKEAEARELKHGVEEITRDIPNVRDEDLAHLDDSGIVKIGTYVNGGMIL
VGKVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSMEGVVVDVKVFTKKGYDKDP
RTLEMEKAERDELEREHYDRLLMIDKEEMMRVVSLLTKSPLESDVTANGTSYSAGDLIKA
EDLENVNRFAMNNIVKAYSEEVQAKYNKTKNHFQKEKKKFRDEHEEKLTILEKDDILPNG
VVKYVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYMANGRSVDVCLNPLGVPS
RMNIGQILEMHLGMVGRELGYQIQEQFEQEQADLIASIRKQLGEIAGAARLMKLEDAVAK
MSDDEILKFGRDWAKGGVRFATPIFEGVNAEEFENLFAMAKMDKDGKTVLFNGKTGEQLK
ERVNVGYMYVIKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYG
ASAVLKEMLTIKSDDVDGRVAAYKALTKGESVPESGIPETLFVLTKELQSLALDVEIFDE
VEDDEQISAD
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacacactctactccggaaaccgcttacgtgttgacttcgctaaaaccccgcaa
cagatcgatgttccgaacctccttcaactgcagctgagctcttacgaaaactttttgatg
atggatcagaaggatcgtgccgaaagtggactggaacgtgtattccagtccgtcttcccg
atccatgacgcccagaaccgcattaccctcgagtacatgggttctgaaatcggtacgccg
aaatacaccgtacgcgaatgtatggaacgtggacttacctactccgtctccctgcgcatg
aagacccgactggtcctctgggaacgtgatgagaacacgaaagagaaaaaaggtgtcagc
gagatcaaagaacagtcgatctttatccgtgacatcccgctgatgacggaccgtacctct
ttcgtcatcaacggtgtcgagcgcgttgtcgtcaaccagctccaccgctcaccgggcgtt
atcttcaaagaagaggaagcgaccacggcgggtaacaaactgatctataccggtcagatc
atcccggaccgcggttcttggctctatttcgagtatgacccgaaagacatcctctacatg
cgcatcaacaagcgccgtaaagtgcctgttacgatcatgttccgtgccctggggtacagc
aaacaggatatcctgaagctcttctacccgctccagacgatcgagatcgtcgacaacgcc
ttcctgatgccgttcgaaccggagcagttcgacggtcgcctggagttcgacctgcgtgac
gaatccggcgaagtcctcgtcgcagccggcaaacgtctctctgcgaaaaaagcgcagaag
atgatcgaaaccggcacgacgcgtgtccagtacccggtcgaagtgctttgcgaacgtcac
cttgccgaaccgatcatcaaccctgaaacgggcgaagttctcttcgatacgatgacctcc
atcgacgagatgaaactcaagaagatcgcggaagcgggcatcggctccttcgtcatcgcg
aacgacctggcctccggcgtcgacagctccatcatcaacgcgttcctggcggacgcggac
tccttgaagctgctcaagcagactgaagagctcgaagatgagaacgacctggcagcgatc
cgtatctacaaggtaatgcgcccgggcgaaccggtcaccaaagaggcggcaaaagctttt
gtcaaccagctcttctttgacccggaacgttacgacctgacccgcgtcggccgtatgaag
atgaaccataagcttggccaggagatcccggagtacgtcaccgtactgaccaacgaggat
atcatcaacacggtcaagtacgtcatcaaagtcaagaacggcaagggccacatcgacgac
cgtgaccacctcggtaaccgccgtatccgctccatcggtgagcttctcggcaacgagctg
cacaacggtctgatcaagatgcaaaaagcgatcaaggacaagctctccacgatgagcggt
ccgatggccgaactgatgccgcacgacctgatcaactccaaaatgatcacttcgacgatc
atggagttcttctccggcggtcagctgagccagttcatggaccagacgaacccgttgtca
gaagtgacgcacaagcgccgcctctccgcactgggcgagggcggcctcgtcaaagagcgc
gcgggcttcgaagtccgtgacgtccacccgacgcactacggccgtatctgtccgatcgag
accccggagggtcagaacatcggtcttatcaacaccctcgcgacctacgcgaaggtcaat
gagcacggctttatcgaagcgccgtacaacgtggtcaaagacggcatcgtccagtacggt
gacgagaacgtcatctatctgacggcgacccaggaagaggggatgaccatcgctgcggca
tcgaacaaagtcgatgcgaacggcaagttcgccgaagagctcatcgagctgcgcaaagac
ggtgagatcattctcggttctcctaccgatgcggactacatggacctttcgtcacacatg
gtcgtcggtgtcgccgcgtcgctgattccgttcctcgaacacgatgacgcgaaccgcgcg
ctgatgggatcgaacatgcagcgccaggcggtaccgctgctcaagccgtccgcaccgatg
gtcggtacgggtatcgagaaactggttgcccgcgatgcgtgggaaagcgtcaaagcgaag
cgtgccggtgtcgtcgagaagatcgacgcccgccacatctacgtcatcagcaaggacgaa
gagggtgcggtcatcgattactacccgctgcagaagaacctgcgtaccaaccagaatacg
acgttcggtcagaagccgatcgttaaggtcggggagaaggtcgaagcgggccaggtcatt
gctgacggtccgaacatggatcagggtgaactcgccctcggccagaacgcgctcgtcgcg
tttatgccgtggaacggttacaacttcgaggatgcgattgtcatctccgaaaagctgatc
cgcgaagatgcgtacacttccgttcacatctacgagaaagaggcggaagcgcgtgagctg
aagcacggtgtcgaagagattacccgtgacatcccgaacgtccgcgacgaagaccttgcg
cacctggatgacagcggtatcgtgaagatcggtacttatgtcaacggcgggatgatcctc
gtcggtaaagtttcaccgaagggcgaagtgaagccgacgcctgaagagcgtcttctgcgt
gccatcttcggtgaaaaagcgggccatgtcgtcaacaagtcgctctactgcccgccgagc
atggagggggtcgtcgtcgacgtcaaggtctttacgaaaaaaggctatgacaaagacccg
cgtaccctcgagatggagaaagcggagcgcgacgagctcgagcgcgagcactacgaccgc
ctgctcatgatcgacaaagaggagatgatgcgtgtcgtctccctgctgacgaagtcgccg
ctggagagcgacgtgacggcgaacggtacttcttacagcgccggcgacctgatcaaggcg
gaagaccttgagaacgtcaaccgcttcgcgatgaacaacatcgtcaaagcgtacagcgaa
gaggtccaggcgaagtacaacaagacgaagaaccacttccagaaagagaagaagaagttc
cgcgacgagcacgaagagaagctgacgatccttgaaaaagacgacatcctccccaacggc
gtcgtcaagtacgtcaaggtctacatcgcgacgaagcgcaagctgaaagtcggggacaag
atggccggtcgtcacgggaacaagggtatcgtctctacgatcgtcccggaagtcgacatg
ccgtacatggcgaacggtcgctccgtcgacgtctgtctgaacccgctgggggttccgtcg
cgtatgaacatcggtcagatcctcgagatgcacctcggtatggtcggccgcgagctcggc
taccagatccaggagcagttcgagcaggaacaggcggatctgatcgcttcgattcgcaag
cagctcggcgagatcgccggcgcggcacgcctgatgaaactcgaggatgccgttgccaag
atgagcgacgacgagatcctgaaattcggtcgtgactgggcgaagggcggggtccgtttc
gcgacgccgatcttcgaaggggtcaacgccgaagagttcgagaacctcttcgcgatggcg
aagatggataaagacggtaaaaccgtcctgttcaacggtaagaccggtgaacagctcaaa
gagcgtgtcaacgtcggttacatgtacgtcatcaaactgcaccacttggtcgacgagaaa
gtccacgcccgttccacggggccgtactccctcgttacccagcagccggtcggcggtaaa
gccctcttcggcggtcagcgcttcggggagatggaagtatgggctctcgaggcctacggt
gcttccgcggtcctcaaagagatgctgacgatcaagtcggatgacgttgacggtcgtgtc
gcggcgtacaaagcattgacaaaaggtgaaagcgtgccggaatccggtattccggaaacg
ctgttcgtactgacaaaagagctgcaatcccttgcgcttgatgtagagatttttgacgag
gtggaagacgatgagcaaattagtgccgattga
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