Thiothrix lacustris: RCF98_17040
Help
Entry
RCF98_17040 CDS
T09396
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
tlc
Thiothrix lacustris
Pathway
tlc01501
beta-Lactam resistance
tlc01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
tlc00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
RCF98_17040
01503 Cationic antimicrobial peptide (CAMP) resistance
RCF98_17040
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tlc02000
]
RCF98_17040
01504 Antimicrobial resistance genes [BR:
tlc01504
]
RCF98_17040
Transporters [BR:
tlc02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
RCF98_17040
Antimicrobial resistance genes [BR:
tlc01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
RCF98_17040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
SecD_SecF_C
Motif
Other DBs
NCBI-ProteinID:
WML90661
UniProt:
A0ABY9MS56
LinkDB
All DBs
Position
3510288..3513548
Genome browser
AA seq
1086 aa
AA seq
DB search
MNDFPKAADPAEIEHPNLGLAGVTAKAFITSPLSLLLLLAFFAVGVLGMWVTPRQEDPQI
SVPMVDIFVGYPGASAQEVEKLISRPLESILSEMTGVDHVYSVSMHEQSMVTVQFIVGQE
LEASLVKLYDKLASNQDKIPQQASTPSVKPKGADDVPLVTLTLWSNKVEDTNLRLIGLDV
LQSLREVENTSQSFMVEGRHEALKVEILPERLATFGVSLEQVANAIRMANSERSTGTVEP
NQKVFKIYSGIFLNSAADIQRLIVTVAGGRPVYVRDVATVTEAAMEADHAVAYFTGPAAQ
AVPETADNAAAVTLAIAKKKNTNGVDVANAILAKLEVLKGRIIPDNVHVEVTRNYGATAK
EKVDELIFKLFVATGIVTLLVWFFLGWRAATVVLIVIPAVITTTVFAAWLMGMTIDRVSL
FALIFSIGILVDDAIVVVENIYRRWLMDSSTKISIAVDAVREVGNPTILATGTVIAALLP
MGFVSGMMGPYMRPIPVLGSVAMVISLFAAFAFTPWLTNRFRPSLKSLQAAAEKEHKQAA
MMEKFFRGVITPLVDSRFKGFTFLVGIIATFFVFMLMFYPFTGVRVKMLPLDNKPEFNVV
VNMPEGTAMPVTANLVYQLAGKLKTLPEVTALQTYTGTASPFNFNGLVRHYYLRQQPWQA
DIQVQLSPKHDRKRSSHEIAVEAREILQPLLGNTGAKLQVVEMPPGPPVLQSVVAEVYGP
DANTRRQVAADLTRFFSQAENLGDVDNLMEDDHEVLRFIVDSDKAQRNGITAEAINRTLE
MAMGGYVLGDIKKNALIDPTRIVMQIPLEARSQIYRLSQLPVTNPTGQAVPLQELGTFVF
EKQDKPIYRKDLRPVEFVTAETTGRLAAPVYGQSQVENLLKAANNGEGYRSPDGTLLHEQ
AYWLKTPQEVESKSAFEWGGEWTVTWETFRDMGIAFAAALVLIYMLIVAQFGNFILPAII
MAPIPLTLIGIVPGHWLMNAEFTATSMIGFIALAGIIVRNSILLVDFARGEVAKGMPVLD
AVIHSCEARTRPILITALALFGGSMVILSDPIFQGMAVSLIFGGAVATLLTLLIIPLGCI
SAGKSL
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatttccccaaagccgccgatccggctgaaatagagcaccccaatttggggttg
gcaggcgttaccgccaaagcctttattacttcgccgctctccttgttgttgctactggct
ttttttgccgtgggtgtgttggggatgtgggtcacgccgcgtcaggaagacccacaaata
tccgtgccgatggtggatatttttgtgggctatcccggtgcgtcggcgcaggaagttgaa
aagctgatttcccgtccgctggaaagtatcctctcggaaatgacgggggtggatcacgtt
tactcagtgtccatgcacgaacagtcgatggtcacggtacagtttatcgtgggtcaagaa
ctggaagcttcgctggtcaaactttacgacaagttggcctccaatcaagacaagattccc
cagcaagcctcaacccctagcgtgaaacccaaaggggcggatgatgtcccgctggttacg
ctgaccttgtggtcgaataaagttgaggataccaacctgaggctgattgggttggatgtc
ctgcaaagcctgcgcgaagtggaaaacaccagccagagtttcatggtagaaggccgtcat
gaagccttgaaggttgaaatattgcccgaacgtttggcgacctttggggtatcgctggag
caggtagccaatgctatccgcatggcgaattcggaacgcagcactggcacggttgaacct
aaccagaaagtcttcaagatctatagcggtattttcctgaattctgccgccgatattcag
cgtctgattgtgacggtagcggggggcaggccagtctatgtgcgtgatgtcgcgacggtg
acggaagcagcgatggaagcagatcatgctgttgcttactttacaggccctgcggcgcag
gctgtgccagaaactgccgataatgccgctgcggtcacgctggcgattgccaagaaaaag
aacaccaatggtgtcgatgtagccaatgcgatactggcgaaactggaagtgctcaaaggc
cggattattcccgacaatgtgcatgtcgaagtgacccgcaattatggggcaaccgcgaaa
gaaaaggtcgatgaactgatcttcaagctgtttgttgcgactggtatcgtgacgctgctg
gtgtggttcttcctcggttggcgcgcggcgacagtggtgctgatcgtgattccggcggtg
attaccaccacggtgtttgcggcttggctgatgggtatgacgattgaccgggtgagtctg
tttgcgctgatcttctccatcggcattctggtcgatgacgccattgtggtagtggaaaat
atttaccggcgctggttgatggacagcagtaccaagatcagtattgcggtcgatgcagtg
cgtgaggtaggcaacccgactattctggcaacgggcacggtgattgcagctttactgccg
atgggctttgtcagcggcatgatggggccttatatgcgcccgattccggtactgggttcg
gtggcgatggtgatttccttgtttgcagcgtttgcctttacgccgtggctgaccaatcgc
tttagaccttccctgaaaagcttgcaggcggcggcggagaaagagcacaagcaagcggcg
atgatggaaaagtttttccgtggtgttatcacacctttggtcgatagccgttttaagggc
tttacctttctagtgggcattatcgctaccttcttcgtgtttatgctgatgttctaccca
ttcacgggtgtcagggtgaaaatgttaccgctggataacaagccggaattcaatgtggtg
gtcaatatgccggaaggcacggcaatgcccgtgaccgccaatctggtgtaccaactggcg
ggcaaactcaagaccttgccggaagtaactgctctgcaaacctatactggcacagcttcg
cctttcaatttcaacggcttggtgcgccactattatttacgccagcaaccttggcaggcg
gatatacaggtacagctttcccccaaacacgaccgtaagcgcagcagccacgagattgcg
gtggaggcgcgggaaatcctgcaacctttgctgggcaatactggcgcgaaacttcaggtt
gtcgaaatgccgccgggccctccggtgctgcaatctgtagtcgccgaggtttatggaccg
gatgcgaatacccgccgtcaggtcgcggctgatttgactcgcttctttagtcaggccgaa
aaccttggggacgtggataacttgatggaagacgatcatgaggtgctgcgcttcatcgtg
gattcggacaaggcgcaacgtaatggcattactgccgaagcgatcaaccgcaccctggaa
atggcgatggggggttatgtgttgggtgacatcaagaaaaacgccttgatcgacccgacc
cgtattgtgatgcagattccgttggaagcccgctcgcaaatttaccgcttgtcacaactg
cccgtgaccaacccgaccgggcaggctgtaccgttgcaggaattaggtacattcgtgttc
gagaagcaggacaagccgatttaccgtaaggatttgcgcccggttgaatttgtgacggct
gaaaccactgggcgtttggctgcaccggtttacgggcaaagtcaggtagaaaatctgctg
aaggctgccaacaatggcgaaggctaccgcagcccggatggcacgttgttacatgaacaa
gcttactggctcaagaccccgcaagaggtggaaagtaaatccgctttcgagtggggcggt
gaatggacagtaacgtgggaaaccttccgcgatatggggattgcgtttgcggccgcgctg
gtattgatttatatgctgattgtggcgcagttcggtaatttcatcctgcctgccatcatc
atggcaccgattccgctgaccttgatcggcattgtgccggggcattggctgatgaatgca
gagtttaccgcaacgtcgatgatcggctttattgcgctggcggggattattgtgcgcaat
tccatcctgctggtggactttgcccgaggtgaagtggctaaaggtatgccggtgttggat
gcggttatccattcttgtgaagcgcgtacccgcccgattttaattacggcgctggccttg
tttggtggctcgatggtgattctctctgacccgatttttcagggtatggcggtgtcactg
atctttggcggggctgtggcgactttattgaccctgctgattattccgctgggttgcatc
agtgccggaaagtcactgtga
DBGET
integrated database retrieval system
