Temnothorax longispinosus: 139819210
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Entry
139819210 CDS
T10889
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
tln Temnothorax longispinosus
Pathway
tln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139819210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tln03019
]
139819210
Messenger RNA biogenesis [BR:
tln03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
139819210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_16
TPR_14
TPR_2
TPR_CcmH_CycH
TPR_1
TPR_8
TPR_17
TPR_12
TPR_11
ANAPC3
TPR_7
ARM_TT21_C
TPR_9
TPR_21
PknG_TPR
DUF7017
BTAD
Alkyl_sulf_dimr
TPR_20
DUF5588
TPR-S
RAP80_UIM
TPR_15
Motif
Other DBs
NCBI-GeneID:
139819210
NCBI-ProteinID:
XP_071644507
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All DBs
Position
9:complement(14657426..14664245)
Genome browser
AA seq
1300 aa
AA seq
DB search
MSDDIKILLKEARESFKQNEYLEVMKKCKKVLKKDKSNYAALVLLARSMQEVEEFKSQVS
LVLQKAVEVQPNNPLAWQGLAAHYEKAPQDHDNWKKLALAYCKLLQLDSDSPKFTHFVNK
ISEIILRIKNDDVLSEALNTLSTLREVSTKEKISLIDKTLVWVLSEYPNDRINEHQELYE
NVLASVIKDVELMNRQEYYRKYLKMLYDLNKFTVLLAAAQDMHIQFSQDACPLEWLCRIY
YENAALSENELEIDITQFYEQLFKLSTNSDVALIAKAAYLKRKDELIDSRDCLKKVVLLN
AQSFYAWLMLSQIHYDLYCWEETENASRKALQLIKPCLKDKFQQGIELKLLEAISRSSDK
EKLVEARQMCEELLSIESSIQLRVIHARINILLDEPDVTAIINNLESQDKTKLQAFVLKA
LHLKEHKQYQEAINILELALENSEAWLLFGKIYWDMEDYNSSLVAFLNGVQADRNNWECM
LYLGRYYREHSNDIERSRKCYHTALQINPNSEEAGIGLSTAYRLLKDTAANIRLLHRVTK
QGTGPRWAWLQLGLHYLDEGDAGQAITALQHVIRADPNDNHSWESLADAYLARGAHTSAL
KSYQRALQLSPGSLYPMIQLANIKLLIGQHKEAKEAFESILQNDERHILALKGLAQACIG
LAKENIAKQFLCRARENLQQAADSLVDVIMIRNDLLCNYKLLGDVCYRIVTLPEKYCYLR
IKQKAFSLAMMNCDSTEKYVNIKGDEILMLSIGYFSRIISMQNSASLWHDLTCCYLMQLN
RATTVNKSDVATKCYEAAKRSIKLCPQSWLHWNILGVICMSVYVKNYALAQHCYVMAIER
ESNNATAWSNLGTLYLYLGDIYKANEAFSRAQRADPSYVNSWVGQGLIAEKILRKEAMDL
FRHSTQLGYHNQAALGYAHWVLTTLLSPAMKKDPLLIYFIENMHAIPAASDVLTWYLERE
PYDVYALNTHGLLLERLKLYNTAAKQFAMALKLSEDEERDMISINLARILIQTGKYEEAV
GLCNQVKCANFNSQCHLALSLFKAKQYEESYDTYEAALHWLADTSADKANILCAMATIAY
MFQGADAVKTLLFQCIQIKPPIVAGFLATAALGILHDDVNLTSLVLNELKSYENHHEYGY
HVVILSAYHQVIQGNLTQATRILTKAIFRHPNDVRYWVRLVRVLLLDEDLNIFRKCALTA
LTLSRNTSMTDIVYVACASAYSHFGTKEGLRQAQKNIFTYPSNVESWANFVAALLSRNKD
CAPINNQWILSLISVMKSQFQTSENMSRWLFHNERELDNL
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgacataaagatcttgttgaaggaggcccgcgagtccttcaagcaaaacgaa
tatctggaagttatgaagaaatgcaagaaggttttgaagaaggacaagagcaattatgcg
gcgttggttctgttagcacgttccatgcaagaggtggaggaatttaaatcgcaggtgtcc
ttggtccttcaaaaggccgtggaggtgcaaccgaataatccgttggcctggcaaggatta
gcggcacattatgagaaggctccacaggatcacgacaactggaaaaagttggctctagcc
tattgcaaactgttgcagttagatagcgactctcctaagttcacgcatttcgtgaataaa
atctccgaaattatcttgcgcatcaagaatgatgatgtcttgtccgaagcgttgaacaca
ttgagcacgttacgagaggtttctaccaaagagaagatcagtctgatcgataagaccctg
gtatgggttttatcggagtaccctaatgatagaataaacgagcatcaggagctttatgaa
aatgtgttggcgtctgtaataaaagacgtagagctaatgaatagacaagagtattacagg
aaatatttaaaaatgctgtatgatttaaataaatttacagtgttgttagcagccgctcaa
gacatgcatattcaattttcacaggatgcttgtcctttagaatggttgtgccgtatctat
tacgaaaacgctgcactgtctgaaaatgaacttgagatcgacataactcagttttatgag
cagcttttcaagctgagtacaaattccgatgttgcgctcatcgcgaaagcagcatatttg
aaaagaaaggatgagttaatcgattcacgcgattgcttgaaaaaagtagtcttgttaaat
gcgcaatcgttttatgcttggttgatgttaagccaaatacattatgacctctactgctgg
gaagaaactgagaatgcttctagaaaagcgctacaattgataaaaccctgtttaaaggat
aaatttcaacagggaatcgagttgaagttgcttgaagcgataagcagaagtagcgacaaa
gaaaaattggtggaagcacgtcagatgtgcgaagagctgttaagcattgagtcttccata
caattgcgagtgatacatgcacgcataaatatattactagatgaaccagatgttactgct
ataataaataacttggaatctcaggacaaaactaagctccaagcttttgttctcaaagcg
ttgcatctaaaagagcacaaacagtatcaggaagctataaacattctcgagctagcttta
gaaaattctgaagcttggttgctgtttggtaaaatatattgggatatggaagactacaac
agcagtctggtggcattcttaaatggtgtacaagcggatcgcaataattgggaatgcatg
ctttacttaggacgttattaccgtgaacatagtaacgacatagaacgttcaaggaaatgt
tatcacaccgcgttgcaaatcaatccgaattccgaggaagctggtattggattgagcaca
gcttatcgtcttctcaaggataccgctgccaatatccgactgttacacagagtaactaag
caaggtactggaccgagatgggcttggctccaactgggtttgcattacttggatgaaggt
gacgcggggcaagctattacggcattacagcatgtgatcagagccgatcctaatgacaat
cacagctgggaatctctggcggatgcgtacttagcacgcggtgctcacacatcggcactg
aaatcgtatcaacgtgcgctacagttgagcccaggatccttgtatcccatgatacaacta
gcaaatatcaaactactcattggtcaacataaagaagccaaagaagccttcgagagtata
ttgcagaacgatgaacggcacattcttgcattgaagggtctagcacaagcgtgtataggt
ttggcaaaggaaaatatagcgaaacaatttctatgtcgtgcgagggaaaatctacaacaa
gcagcagacagtttggtagatgttattatgatacgtaatgatctactttgcaattacaaa
ttgctgggagatgtatgctatagaatagtcactctgccagaaaagtattgctatttaagg
attaagcaaaaggctttctctttggcgatgatgaattgcgacagtactgaaaaatatgtg
aatattaaaggagacgagatactcatgttgtcaatagggtattttagccggataatatcc
atgcaaaattctgcatcgttatggcatgatttaacctgctgttatttgatgcaactaaat
cgcgctactacagtaaacaagagcgatgtggcgactaagtgctatgaagctgcaaaacgt
tccattaaactctgcccgcaatcgtggctacattggaatattctgggtgttatttgtatg
tcagtgtatgtaaaaaattatgctctggctcagcattgttacgttatggcgatcgaaaga
gagtcaaacaatgcaacagcttggagcaatttgggaacattatacttgtatctaggagat
atctataaagcgaatgaagcattttctcgagcgcaacgtgcggatcctagttacgtgaat
agctgggtcggacaaggattaatcgcggaaaagatcctgaggaaggaagcgatggatctg
tttcggcattcgacgcaactgggttatcacaatcaagcggctttaggctatgctcattgg
gtgcttaccactctcctgagtcccgcaatgaagaaagatccactgttgatttattttatc
gagaacatgcacgcgatacctgcagcatctgacgttctcacttggtatttagaacgcgag
ccgtatgatgtttatgccctgaatacccatggcttattattggaacggctgaaattatac
aacacggcggctaaacaatttgccatggctttaaaactgagcgaggatgaagaaagagat
atgatatccataaacttggcacgcatcctgattcaaaccggaaagtacgaagaagcggta
ggattgtgcaaccaagtgaaatgcgcaaatttcaattctcagtgccatcttgcattatcc
ttattcaaagccaagcagtacgaagaatcgtacgatacatatgaagcagctttacattgg
ctagcagacactagtgcagataaagcgaatatcttgtgcgcgatggccacgatcgcttac
atgttccaaggggcagatgctgtcaagaccctgctattccaatgtatacaaataaaaccg
cctattgtggctggtttcttagcgactgccgcgttaggaattttacatgacgacgttaat
ttgacttctttggtactgaacgaattgaaatcatatgaaaatcatcacgagtatgggtat
cacgtcgtcatactgtcagcataccatcaagttattcagggaaatctcactcaagctaca
cgaatactcaccaaagctattttcaggcatcctaacgatgttagatattgggtacgcctt
gttcgagttttattgttggacgaagatctgaatattttccgtaaatgtgctctaacggcg
ttgacgctaagcagaaatacgtctatgaccgatatcgtatatgtagcttgcgcatcagcg
tacagtcacttcggcacgaaagagggtcttcgacaagctcagaaaaatatatttacatat
cccagcaatgttgagagctgggctaatttcgttgcagctcttttatccagaaataaggat
tgcgctccaattaataatcagtggatattgtcgctaatatcagtaatgaaatcgcaattt
caaacctctgaaaatatgtcacgatggttatttcataatgagagagaacttgataatctc
taa
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