Temnothorax longispinosus: 139819300
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Entry
139819300 CDS
T10889
Symbol
Thoc5
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
tln Temnothorax longispinosus
Pathway
tln03013
Nucleocytoplasmic transport
tln03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tln00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139819300 (Thoc5)
09122 Translation
03013 Nucleocytoplasmic transport
139819300 (Thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tln03019
]
139819300 (Thoc5)
03041 Spliceosome [BR:
tln03041
]
139819300 (Thoc5)
Messenger RNA biogenesis [BR:
tln03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
139819300 (Thoc5)
Spliceosome [BR:
tln03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
139819300 (Thoc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
ATAD4
RWD
Motif
Other DBs
NCBI-GeneID:
139819300
NCBI-ProteinID:
XP_071644626
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All DBs
Position
9:71946..75587
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AA seq
670 aa
AA seq
DB search
MGKENESDSAKKRRKSVNASSGTASMKDGDMYKTIISYEEKEAIERLSEDDSESFLLTCD
DIRAAMTKIAKLKSSGDSNMKDEIRELQIQTSLAFIELKKLNRMEKFRTKSARDSLVAAK
SSVDSRHLHLQNLLYEVMHLKKEVIKCLQFKSKDELIELVSEEEFYKEAPESISRPEITK
NNPHQLRLARLEWELTQRKQLAALCDELTESKKAVASSIETKQTRLDNLAPQLRSILEAS
KPLQESLGLPLDKIRQEHQKASLLASPLYVLYAKASAYRDAYDSTLLVRVEGDEDEARRA
NNHDGLQESDSDTENQSESIVEEMPVHKKRHHRLSREARQEEKRSKLLQRHPLRVKIVIT
LKSETRLTLHFYYMIHLKVVTVESKLETEDLGGISAGDMLVSESVLRELYPRDLGLESPN
PANQYQLSRHNLGSFSSLGLGVPYKWAQKMAGLHFVACDVSEQQQKLTSQELAQDCVESV
LKEIKRRIKARLDLCMEIRQLESGNLPIFISTTDPVPQKISTSLHRFTTMTWKSYSNYVA
SPEFYQRGLVLSVDIFYEAVLRRGSSELVARIAIKPDYPKIAPVFSISVSPTVPASADII
RDIEREVNVMWTKSPTLTAQIQRLRACFDIYLETESMAPKEKIFFYPVRGRTRARPYKYL
SLGGGIFTHR
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaggagaacgaatcggatagtgcgaaaaaaagaagaaagtctgtaaatgcgagc
agtggaacagcgtcgatgaaagacggagatatgtataagacaataatcagttacgaagag
aaggaagctatcgagagattgtccgaggatgattccgaatcctttttgctaacctgcgac
gatattcgagcagcgatgacgaaaatagctaaattgaaatccagtggtgactcaaacatg
aaagatgagattcgcgagctgcaaattcaaacgtccctggcttttatagaactaaagaaa
ctaaatcgcatggaaaagttccgtacaaaatcagcacgcgactctctagtggctgccaag
agtagcgttgatagcagacacctgcatttacagaatttattgtacgaagtgatgcatttg
aagaaggaagttattaaatgtcttcaattcaaatccaaagatgaattgatagaacttgtt
tcagaagaggaattttataaagaagctccagaaagtatctcacgacctgaaataacaaag
aataatcctcatcaattgagactggctcgtttggaatgggaactgacgcaacgaaagcaa
ctggcggcattgtgcgacgaattgacagagagtaaaaaggcggtagcgtccagtattgaa
acgaaacagactcgtttggataatctcgcgccgcaattgcgttctatattggaagcgagc
aaaccgttacaagaaagtcttggattgccgttggacaaaattcgccaggagcatcaaaag
gcttcattgcttgcatcaccgctctatgtattgtatgcgaaggcatctgcttacagggat
gcttatgatagtacattgctggtcagagtggaaggtgacgaagacgaagcgagacgcgca
aacaatcatgacggtttacaagagtctgactcggatactgaaaatcaatcggaaagtatc
gtggaagaaatgcccgtgcataagaaaagacatcacagattatcccgagaagctaggcaa
gaagagaaacggtccaaactattgcagcgacatccgttgcgcgtaaaaatagttattaca
ctaaaaagtgaaacaaggctgacgcttcacttttattacatgatacatttgaaagttgtt
acggtagaatcgaaactcgaaacggaagatttgggaggtattagtgctggagacatgctg
gtatccgagtcggttcttcgcgaattgtacccacgagatttaggattggaaagtccgaat
cccgccaatcagtatcaactgtcgcgacataacttgggatcgttttcgtctttgggacta
ggcgttccctacaaatgggcacaaaagatggccggcctacactttgtcgcgtgcgacgtg
agcgaacaacaacaaaagcttacgagtcaagaattggcacaagattgtgtggagagtgtg
ttaaaggaaattaaacgacgtataaaagcgaggctggacctatgtatggaaatacgacaa
ctggaatctggcaacttgccaatctttattagtacgactgatcccgtgccgcagaaaatc
tcaacgtcgttgcatcgatttacgactatgacctggaaaagttactcgaattacgtcgct
tcaccagaattttatcagcggggattagtgttgtccgtagacatcttttacgaggctgta
cttcgtcgtggcagtagcgaactcgtggccaggatcgctatcaaaccagattacccaaag
atagcaccggtatttagcataagcgttagtccaacggtgccagcgtctgccgatataatc
agagacatcgagagggaagtcaacgtgatgtggaccaagtccccgacgttgacggcgcaa
atacaacggctgagagcatgctttgacatctatctggagactgagagtatggcgccgaag
gaaaagatattcttctatcctgtgagaggacggactcgcgctcgaccatacaaatatttg
tcgttgggaggaggcatattcactcatcgttga
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