KEGG   Thiothrix litoralis: J9253_18770
Entry
J9253_18770       CDS       T07754                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
tlo  Thiothrix litoralis
Pathway
tlo02024  Quorum sensing
tlo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tlo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    J9253_18770 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    J9253_18770 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tlo03019]
    J9253_18770 (hfq)
   03036 Chromosome and associated proteins [BR:tlo03036]
    J9253_18770 (hfq)
Messenger RNA biogenesis [BR:tlo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     J9253_18770 (hfq)
Chromosome and associated proteins [BR:tlo03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    J9253_18770 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: QTR46001
UniProt: A0ABX7WQ50
LinkDB
Position
complement(3871953..3872183)
AA seq 76 aa
MSKGHTLQEPFLNALRKERIPVSIYLVNGIKLQGHVESFDQFVVLLGNTVSQLVYKHAIS
TIVPARPIKLALAPEE
NT seq 231 nt   +upstreamnt  +downstreamnt
atgtcgaaagggcacacattacaagaacccttccttaatgctctgagaaaggaacggatt
ccagtctccatttatttggtcaacggcatcaaattacaggggcatgtcgagtcatttgac
caattcgttgtactattggggaatactgttagccaattagtctacaaacatgccatttcc
acgatcgtgcctgctcgcccgatcaaactggcgctggctcccgaagaataa

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