Legionella micdadei: LMI_0429
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Entry
LMI_0429 CDS
T03810
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tmc
Legionella micdadei
Pathway
tmc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tmc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LMI_0429 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmc03021
]
LMI_0429 (rpoB)
03400 DNA repair and recombination proteins [BR:
tmc03400
]
LMI_0429 (rpoB)
Enzymes [BR:
tmc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LMI_0429 (rpoB)
Transcription machinery [BR:
tmc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LMI_0429 (rpoB)
DNA repair and recombination proteins [BR:
tmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LMI_0429 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
DUF6497
Motif
Other DBs
NCBI-ProteinID:
CEG59776
UniProt:
A0A098GE68
LinkDB
All DBs
Position
I:432568..436677
Genome browser
AA seq
1369 aa
AA seq
DB search
MAIAEAKPHQYSHAEKKRFRKSFGKQADIMEIPNLLEIQLKSYRDFLQTDSKEGEQQKTG
LHAAFSSVFPIESFSGNARLEYVSYKLGEPAFDVRECKLRGLTYSAPLRVKIRLVVFDKD
AAGEPKPIKDIREQDVFMGEIPLMTDVGTFVINGTERVVVSQLHRSPGVIFEHDRGKTHS
SGKLLYSARIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPVSILLRALGYETEDILSEFFE
TTTCQLRNGEFHINLIPSRLRGEIASFDIIAPETGELIVEQGRRITARHIKLMEKSNMQD
LVVPHDYLVGKILAKHVVNTETGEVLAQANDEVTAELLDQLAEHGILSFDMIYTNDLDHG
SYISDTVKIDPTTSQLEALVEIYRMMRPGEPPTKEAAEALFKNLFFAEDRYDLSAVGRMK
FNRRVGRKEDTGPGTLTKEDILAVIKTLIDIRNGIGMVDDIDHLGNRRVRSVGEMAENQF
RVGLVRVERAVKERLSLVESENLMPQDLINAKPVSAAVKEFFGSSQLSQFMDQVNPLSGV
THKRRVSALGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNEY
GFIETPCRKVIDGRVTDDIEYLSAIEEVDQYIAQSNVAVDENGKILADLVPCRHQNEFSL
TTPDKINYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGM
ERTVASDSGVSVVARRGGVIDLVDASRIVVRVNDDETTAGETGVDIYNLTKYFRSNQDTC
INQRPIVSKGDRIQRGDILADGPCTDMGELALGQNLLVAFMPWNGYNFEDSILISERIVQ
EDRFTTIHIEELTCIARDTKLGTEEITADIPNVGEAALANLDESGVVYIGAEVSAGDILV
GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMNGTVIDVQVFTRDGLEKDER
AKSIEEEHLARVRKDLIDERRIREEDIYHRLHNLLLNKAATGGPNNIKPGSKITAEYLEK
VNREKWFDIHVDDDQVSQQVEQLSKQLELMGKEMEKRFNDSRKKIIQGDDLAPGVLKIVK
VYLAVKRRIQPGDKMAGRHGNKGVISIVVPVEDMPYMEDGTAVDIVLNPLGVPSRMNIGQ
VLETHLGLAAKGLGQRITDLLDNQRQVTEIREFLKKIYNHDDQERVNLDTLDDEELLVLA
NNLRDGVPMATPVFDGASEAEIKSMLELAGMRSDGKTTLYDGRTGKQFDNPVTVGYMYML
KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV
KSDDVGGRTKIYKNIVDGDHRMDPGMPESFNVLLKEIRALGIDIELEHD
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggcaattgcagaagctaaacctcatcaatactcgcatgctgagaaaaaacgatttcgc
aaaagctttggtaagcaagctgatataatggagatccctaatctgcttgaaatccagcta
aaatcataccgagattttttacaaactgattcaaaagagggcgagcaacaaaagactggc
ttacatgcagctttttcgtccgtgtttccaatcgaaagtttctctggcaatgctaggctt
gaatatgtcagttataagctaggcgagcctgcttttgatgtccgtgagtgcaaattacgc
ggtttaacttattctgcacctctgcgtgtcaaaattagactagtcgtttttgataaagac
gctgctggtgaacccaaaccaattaaagacattcgtgagcaagatgtgttcatgggtgaa
atcccactgatgactgatgtgggtacctttgttattaatggtaccgagcgcgttgttgta
tcacaattacaccgttctcctggcgttatatttgagcatgatcgaggaaagacacattct
tccggaaaactcctttattctgcacgtatcataccttatcgtggttcatggcttgatttc
gaatttgatcctaaagactgtgtgtttgttcgtattgatcgcagacgtaagcttccagtc
agcatcctattgcgtgcgctgggctatgaaacagaagatattctttctgaattttttgaa
acaacgacttgccaattaagaaatggtgagttccacattaatctcatcccatccaggtta
cgtggcgaaatcgcctcttttgatattattgcccccgaaactggggaacttatcgttgaa
caaggacgaagaataactgctcgccacatcaaattaatggaaaagagcaacatgcaagat
ctagttgttccgcatgattatttagttggcaagatattggcaaaacatgttgtcaatacc
gaaactggcgaagtccttgcgcaagcaaatgacgaggtaactgcagagttgcttgatcag
ctggctgagcatggcattctaagttttgatatgatttataccaatgatctggatcacgga
tcatatatctccgacacagtaaaaatcgacccaacaacaagccagctagaagcattggtg
gaaatttaccgtatgatgcgccctggagaaccacctactaaggaagcagcggaagcatta
tttaaaaatctattttttgccgaagatcgttatgatctgtcagctgttggaagaatgaaa
tttaatcgccgggttggacgtaaagaggataccggtccaggcacgttaacgaaagaagat
attcttgctgttatcaagaccctaattgatatccgtaatggaattggaatggttgatgac
atcgaccatttaggtaatcgccgtgttcgatcagttggtgaaatggctgaaaaccagttt
cgagtcggattagtcagggttgagcgcgctgttaaggaacgtttaagtctagtagagtcc
gaaaacttgatgcctcaagatctaataaacgctaaaccagtttcagctgcagtgaaagag
tttttcgggtccagtcagctatcacaattcatggaccaagttaacccactatccggcgtc
actcacaaacggcgcgtttctgcactgggcccaggcggtttaactcgagagcgagcgggt
tttgaagtgcgtgacgtgcatactacccattatggccgtgtatgtcctattgaaactcct
gaagggccaaacattgggttgataaactcactatctgtctacgcgagaaccaatgaatat
ggattcattgagacaccttgtaggaaagtgattgatggtcgggtaacggatgatatcgaa
tatctatcagccattgaagaagttgatcagtatatcgctcagtctaatgtggctgttgat
gaaaatggcaaaattcttgctgatcttgttccgtgccgacatcaaaacgagttttcgctc
actacgccagacaagattaactatatggacgtatcgccgaagcagattgtctctgttgcg
gcatctctcattccattcttagagcatgatgatgctaaccgtgcgttgatgggttcaaac
atgcaacgtcaagcagtgcctactttgcgatctgaaaagcctttagttggaacaggtatg
gagcgaactgtagcttccgattctggggtttctgtcgtggcaaggcgaggtggtgtcatt
gatctagtagatgcttctcgtattgttgttcgcgtgaacgatgatgagacaacagccggg
gaaactggggttgatatctataacctaacaaaatacttccgctcgaaccaagatacgtgt
atcaaccaaaggccaatagtttccaaaggagatcgcatccagcgtggcgacattcttgcg
gatggtccttgtacagacatgggagaattagcgttaggtcaaaacctactcgttgcattc
atgccttggaatggttacaactttgaggattctattcttatctctgaacgaattgtgcag
gaagatagattcactaccatccacattgaagagctgacttgtatcgcaagggacacaaaa
ctaggtacagaggaaataactgcggatatccccaatgttggcgaagcagctttagcaaat
ttagatgaatcaggtgttgtttatatcggtgctgaagtaagcgctggtgacattctggtt
ggtaaagttacaccaaagggagaaacacagcttacaccagaagagaaattgttgagagca
attttcggtgagaaagcatcagatgttaaagattcgtctttacgtgtgccttcaggaatg
aatggtacggtcatcgatgtgcaagtgtttactcgtgatggattagagaaggatgaacga
gctaagagtattgaggaagaacatcttgcacgtgtacgaaaggacttaattgatgaacgc
cgtattcgtgaggaagatatttaccatcgtctacataatcttctcttaaataaagcagca
acaggtggccctaacaatattaagcctggttccaagattactgctgaatatttagaaaag
gtaaatagagagaaatggttcgatatccatgtagatgacgatcaggtaagccagcaggtg
gagcagttgtccaagcaattagagctgatgggcaaggaaatggagaaacgctttaatgat
agtcgtaagaagatcattcaaggtgacgatctagcgcctggtgtattgaaaatcgttaag
gtttaccttgctgtcaagcgcagaattcaacctggcgataaaatggcaggtcggcatgga
aacaagggggtaatttcaattgttgtgccggttgaagatatgccttatatggaagatggt
acggcagttgacatagtactaaacccacttggtgtaccttcacggatgaatatcggacaa
gtgttggaaacacatcttggtttagctgcaaaaggattaggtcaacggataaccgatctt
cttgacaatcagcgccaagtaacagaaataagagaatttctgaaaaagatctataatcat
gacgatcaagagcgggtaaatctggatactcttgatgacgaagaactgctagttttagct
aataatctgcgggacggggttccaatggcaactccagtctttgatggtgctagcgaagca
gaaattaagtccatgttagagttagctggcatgagatctgatggtaagaccacactatat
gacggccgaactggtaaacaattcgataatccggtaactgtagggtatatgtatatgctc
aaacttaaccatttggttgacgataagatgcatgcacgctctactggttcctacagtttg
gttactcaacaaccacttggcggtaaggcgcagtttggtggtcaacgcttcggggaaatg
gaagtgtgggctctcgaagcttatggtgctgcctatacgttgcaagaaatgttaaccgtt
aaatcagatgatgtcggaggacgaacaaagatatataaaaatatcgttgatggagatcat
cgtatggatccgggtatgccagagtctttcaatgtattgttgaaggagataagggcatta
ggtattgatatcgaactggaacatgactaa
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