Treponema medium: DWB79_06615
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Entry
DWB79_06615 CDS
T07695
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tmed
Treponema medium
Pathway
tmed03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tmed00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DWB79_06615 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmed03021
]
DWB79_06615 (rpoB)
03400 DNA repair and recombination proteins [BR:
tmed03400
]
DWB79_06615 (rpoB)
Enzymes [BR:
tmed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DWB79_06615 (rpoB)
Transcription machinery [BR:
tmed03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DWB79_06615 (rpoB)
DNA repair and recombination proteins [BR:
tmed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DWB79_06615 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QSH97420
UniProt:
A0ABX7LZF7
LinkDB
All DBs
Position
1468436..1471933
Genome browser
AA seq
1165 aa
AA seq
DB search
MPVRKTVNRQYIGKNIQNFMELPNLIDIQLASYEKFLCRGTHQSGNTSEEVGLEDVFRTT
FPIESPNGDMTLEYQSYTLDENDIKFSEYECKQKGLTYAIPLKAQIDLVFNQTGEIRRKS
IYMGDIPLMTERGTFIINGAERVVVSQIHRSPGVIFSHDKGVYSSRIIPYRGSWLEFEID
QKKDLIYAKLDKKKRILGTLFLRALGYETREQIIDFFYKTEVLPVAEGTTEYDKLVGRVF
AKRITVADESGERTLYQAGEKIHPHVVDELQQNHIAEITVIDFKKEGSLDSPVIINCFER
EEIRFADAAKGQEPTKEEALSVVYAALKPGDPMTVEAAEKDLTSMFFSPRRYDLGRVGRY
KLNKKFDYEHPVEECTLILDDIVNTMKYLIQVYIGDASIDDIDHLGNRRVRSVGELMTNT
LKTAFLRMERIARERMGSKEIETIKPQELISIKPIVATIKEFFGASQLSQFMDQVNPLAE
LTHKRRLNALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSMASYAHVND
YGFLEAPYVKVVNGVATREVEYLSAMDEDKYYIAQVSTAVQSDGTITAEQIACRHQGDYT
TRSSKEVQYMDVSPKQIISVSASLIPFLEHDDANRALMGSNMQRQGVPLVFPEPPRVGTG
MEGKCAYDSGVLIKAKRSGTVTFVSSEKISIESDAPEGTEEKIRDYTLLKYQRTNQDTCY
HQRPIVAVGQHVEVGDVIADGPATYQGELALGRNILVGFVPWNGYNYEDAILISRRVLKE
DMFTSVHIKEFTTEVRETKLGAERITSDIPNKSEKSLDNLDAEGIIRIGAQVRSGDILIG
KITPKNESETTPEFKLLNSIFGEKAKDVRDSSLRVPHGVEGTVIDVQRLKRSQGDDLNPG
VDEFIKVLIATKRKLREGDKMAGRHGNKGIVARILPEEDMPYMEDGTPLDICLNPLGVPS
RMNIGQILESELGLAGLRLNEWYEAPVFQSPTNEQIEKKLVEAGIPANSKVKLRDGRTGM
PFQNDVFVGVIYFMKLAHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALE
AYGAANTLQELLTIKSDDMHGRSKIYESIVKGQAATAAGIPESFNVLVQELRGLALDFTI
YDEKGKQIPLTERDEELITENSSKF
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcggaaaacggttaatcgccaatatatcggaaaaaatatccaaaattttatg
gagctgcctaatttaattgatattcagctcgcatcttatgaaaaatttttatgtcgcgga
acacaccagagcggaaatacttcggaggaagttggtttggaggatgtgtttcggacgacc
ttcccaattgaaagcccgaacggtgatatgacgttggagtaccaatcatatacgctcgat
gaaaatgacattaaattcagcgaatacgaatgcaagcagaaagggttgacctatgccatc
ccgttgaaggcgcagatagacttggtgtttaatcaaaccggtgaaatacgccgtaagagt
atctatatgggtgacattccgttgatgaccgaacgtggtactttcattatcaacggtgcc
gagcgtgttgtcgtatctcaaatacatcgttctccgggtgttatcttttctcacgacaaa
ggcgtctactcaagccgtattattccttatcgcggaagttggcttgaatttgaaatcgac
cagaaaaaagatttaatttatgcaaagcttgataaaaaaaagcgtatcttaggaaccttg
tttttacgggcattgggatatgaaacccgcgaacaaattatcgactttttttataaaacc
gaagtgttaccggttgccgaaggaacgacagagtacgataaactggtaggccgcgtattt
gccaagcggataaccgtagctgatgaatccggagagcgcacgctctatcaagccggtgaa
aagatacatccgcacgttgtcgatgaattgcagcaaaatcatattgctgaaattaccgtt
atcgattttaaaaaagagggcagtcttgattctcctgttattatcaactgttttgaacgg
gaggaaatccgctttgccgatgctgcaaaggggcaggagcctacaaaagaagaggccttg
tcggttgtttacgcagccttaaagcccggcgatccgatgacggtagaagctgccgaaaaa
gatttaacttcaatgtttttctcccctcgccgatatgatctcgggcgtgtgggacggtac
aaactcaataaaaaatttgattacgagcatcccgttgaagaatgtacgcttattctcgac
gatatcgtaaacacgatgaagtacctgattcaggtttacatcggggatgcttcgatagat
gatattgaccatcttggaaacagacgtgtccgttccgttggcgagctgatgaccaatacg
ctcaaaacagcattcctccgtatggagcggattgcgcgcgagcggatggggtcaaaagaa
attgaaacgattaagccgcaagagcttatttctataaaacccatcgttgccactattaaa
gaatttttcggggcaagccagctttcacagtttatggatcaggttaatccgctcgcggag
cttacccataaacgccgtctgaatgcgttgggacccggcggtctttctcgtgaccgcgcc
ggctttgaagtccgcgatgttcactatacccattacggacggatgtgcccgattgaaaca
ccggaaggcccgaatatcggtcttatcgtgtcgatggcaagctatgcgcatgtcaacgac
tacggctttttggaagcgccgtatgtcaaggttgtgaacggtgttgcaactcgtgaggtt
gaatacctttcggcaatggacgaggataaatattacattgcacaggtgtccaccgcagtg
cagagtgatgggacgattactgccgaacaaatcgcctgccgtcatcaaggtgactacacg
acgcgcagttcaaaagaagtgcagtacatggacgtgtcgcccaaacagattatctccgtg
tctgcctcgctcattcccttccttgagcacgacgacgcaaaccgtgcgctcatgggttct
aacatgcagcggcagggtgtaccgctcgtattccccgaaccgccccgtgtcggtaccggt
atggaaggtaagtgcgcgtatgattcgggtgtgttaatcaaagcaaagcggagcggtacg
gttacgtttgtttcttccgagaagatttccatcgaatcggacgcaccggaaggaacagaa
gagaaaatccgcgactatacgctgctgaaatatcagcgcaccaatcaagacacctgttat
catcagcgaccgattgttgctgtcggacagcacgtagaggtcggtgatgtcattgccgac
ggtcctgcaacctatcagggagagcttgcacttggccgcaatattctggtcggttttgtg
ccgtggaacgggtataactacgaagacgctattttgatttcccgccgtgtgctgaaagaa
gatatgttcacgtcggtacatattaaagaatttacgacggaagtccgtgaaaccaagctc
ggtgcagagcggattaccagcgatattccaaataagtcggaaaaaagcctcgataacctt
gatgcggaaggtattattcgtatcggtgcgcaagtccgctccggcgatatattaatcgga
aagattacgcctaaaaacgagtcggagacaacacctgaatttaagctgctcaactcgata
ttcggtgagaaagcaaaagatgtccgcgattcctcactgcgcgtaccgcacggcgttgaa
ggtacggttatcgacgtacagcgcttgaagcgttctcagggtgatgatcttaatccgggc
gttgacgagtttatcaaggtactcattgcgacaaaacgtaagttgcgcgagggtgataag
atggcaggccgccatggaaacaagggtatcgttgcccgtattttgccggaagaagatatg
ccgtatatggaagacggtacaccgctcgatatctgcttgaatccgctcggtgttccttct
cgtatgaatatcggtcagattttggagtcggaactcggacttgcggggttgcgccttaat
gaatggtacgaagcacccgtattccagtccccgaccaatgagcagattgaaaagaaactg
gttgaagcaggtattcctgccaactcaaaggtaaagctgcgcgacggaagaaccggaatg
cctttccaaaacgacgtatttgtcggggtcatctactttatgaaacttgcgcaccttgtt
gacgataagatgcacgcccgttcaaccggcccgtactcgctggtaactcaacaaccgctc
ggcggtaaggctcaattcggcggtcagcgtttgggagaaatggaagtatgggcgctcgaa
gcctatggcgcggccaatacgctgcaggagcttttaaccattaagtctgacgatatgcat
ggacgctcaaagatatacgaatctatcgtaaaaggacaggccgcaaccgccgccggaatt
cctgaatcgtttaacgtattggtacaggaattgcgcggtttggctttggacttcacaatt
tacgatgaaaaaggaaagcaaatcccgctgaccgaacgtgatgaagaattgattaccgaa
aacagctccaagttttaa
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