Temperatibacter marinus: QGN29_00270
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Entry
QGN29_00270 CDS
T09370
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tmk
Temperatibacter marinus
Pathway
tmk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tmk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QGN29_00270 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmk03021
]
QGN29_00270 (rpoB)
03400 DNA repair and recombination proteins [BR:
tmk03400
]
QGN29_00270 (rpoB)
Enzymes [BR:
tmk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QGN29_00270 (rpoB)
Transcription machinery [BR:
tmk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QGN29_00270 (rpoB)
DNA repair and recombination proteins [BR:
tmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QGN29_00270 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WND02799
UniProt:
A0AA52H9D5
LinkDB
All DBs
Position
complement(44336..48433)
Genome browser
AA seq
1365 aa
AA seq
DB search
MTATFTGRKRVRKDFGRISAVTQMPNLIEVQRHSYDNFFKPGATEEERKNSDLEKVLKSV
FPINDFAGTASLEYVRYEIEAPKYDVEECMQRDITYAAPLRVTLRLIVFEIDPDTEAKSV
LDIKEQDVYMGDLPMMTDNGTFVVNGTERVIVSQMHRSPGVFFDHDRGKTHASGKYLFAA
RVIPYRGSWLDFEFDPKDILNVRIDRRRKLPATSLLYALGLSSEDILNYFYNSLNYRLTA
DGWRVAFDATSWRGQKPLFDLVNADSGEVVAPAGKKITPRLAKKLEKDGVEAILVPEEHV
FGKYAAEDMIDEKTGRIHVEAGQELGEEILEKLKSVGIDEINVLDIDNVNVGPYIRNTLA
ADKVETEDGALAEIYKVMRPGEPPTKETADALFYSLFFDEERYDLSAVGRVKMNMRLNVE
CDDDIGVLRREDILRTLKTLVDLKDGRGEIDDIDHLGNRRVRSVGELMENQYRIGLLRME
RAIRERMSSVDIDTVMPHDLINAKPVVASVREFFGSSQLSQFMDQTNPLSEITHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATYAQVNKYGFIESPFR
KVVKGKVTGDVVYLSAMEESKYSVAQANAPLTADDSFENDLVSCREAGEFVMKRPDDIDL
MDVSPKQLVSVAASMIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEAVVARDS
GAAIAAKRPGVVEQVDATRIVIRATEETDASKSGVDIYTLRKFQRSNQNTCINQKPLVKV
GDKIDAGDIICDGPSTDMGELALGRNALVAFMPWNGYNYEDSILISERIVKEDVFTSIHI
EEFEVMARDTKLGPEEITRDIPNVGEEGLRSLDEAGIVYIGAEVHPGDILVGKITPKGES
PMTPEEKLLRAIFGEKASDVRDTSMRLPPGVAGTVVEVRVFNRHGVDKDERAMTIEREEI
ERLTKDREDERAILERNIYGRLKPLLVGREVTSGNRDLKKGSVVTEEALDAMPNIQWWDI
AVDDEVAMNDIEAMKGQFDESRESLQKRFDEKIEKLQRGDELLPGVLKMVKVFVAVKRKL
QPGDKMAGRHGNKGVISRILPQEDMPYLEDGTPVDVCLNPLGVPSRMNVGQILETHLGWA
SRGLGRQIDQMLDAYKHEGMAIDAFHDKFKAVYGEDQYQSDVSDLDEAEMLELAGNLTNG
VPMGTPVFDGAVEADICDLLEMAGLDKSGQVYLYDGRTGEKFDRKVTVGYIYMLKLHHLV
DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVQ
GRTKVYEAIVKGDDTFEAGIPESFNVLVKEIRSLGLDVELLNSEE
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctacttttactggtcgtaaacgcgtgcggaaggacttcggtcgcatttccgca
gtgacacagatgcctaatctaattgaggtacagcgtcactcttatgataactttttcaag
cctggtgcaacagaagaggaacgtaaaaattctgatctggaaaaagtattaaaatctgta
ttcccgatcaacgactttgcagggacggcgtctctggaatatgttcgttatgagatcgag
gcaccgaaatatgatgttgaagaatgtatgcagcgggatattacctatgctgctcctctt
cgtgtcacacttcggttgattgtttttgaaattgatccagacacagaggcgaaatctgtt
cttgatattaaagaacaggatgtctacatgggcgacctgccgatgatgacggataatggt
acattcgttgttaacggtactgagcgagttatcgtgtctcagatgcaccgatcacctggt
gtctttttcgatcatgaccgtggtaaaacgcacgcgtctggtaaatatttatttgctgca
cgtgtcattccttaccgtggctcttggttggattttgaattcgatccaaaagacattttg
aacgtacgcattgaccgtcgccgcaaattgcctgcgacctcattgctctatgctcttggc
ttgtcttcagaggacattctcaactatttctataattcattgaactatcgcttaacggct
gatggatggcgcgttgcctttgacgcgacttcttggcgcggtcaaaagcctttgttcgat
cttgtgaatgcggatagtggcgaagttgttgcccctgcgggtaagaaaattacaccgcgc
cttgctaagaagcttgaaaaagacggcgttgaagccatccttgttcctgaagagcatgta
tttggcaaatatgctgctgaagatatgatcgatgaaaagacgggtcgtattcacgttgag
gccgggcaagagcttggcgaggaaattctcgagaaacttaaatctgtaggtattgatgag
atcaatgttcttgatattgataatgttaatgtcggtccttatatccgtaacacactcgca
gctgataaggttgagactgaagacggtgctttggcagagatttataaagtgatgcgtcca
ggtgagccgccaacaaaagaaacggctgatgcgttattctatagcttgttcttcgatgaa
gagcgctatgatctttctgcggttggtcgtgtgaagatgaacatgcgtcttaacgttgag
tgtgatgatgatatcggtgttcttcgccgtgaagatattctgcgcacgcttaagacactt
gtggatctaaaagacggtcgcggtgaaattgatgatattgaccatttgggtaaccgtcgg
gtgcgctctgttggtgaattgatggaaaatcagtaccgcatcggcttgctacgtatggag
cgtgcaattcgtgagcgtatgtcttctgtagacattgatactgtcatgccgcatgacctg
attaacgcgaagcctgttgttgcaagtgttcgtgaattctttggttcttctcagctgtct
cagtttatggatcaaacgaacccactctcagagattacgcataagcgtcgtctatcagcg
cttggccctggtggtctaacgcgcgaacgggctggttttgaggtgcgtgatgtgcatccg
acccattacggccggatttgtccgattgaaacgccagaggggccgaatattggcctgatc
aactctcttgcgacctatgcacaggtcaataaatatggatttattgaaagtccattccgc
aaggttgttaagggtaaagtcactggggatgttgtttacttgtccgcaatggaagaaagt
aaatattctgttgcgcaggcgaatgcacctcttacagctgacgattcatttgagaatgat
cttgtatcatgtcgtgaagcgggcgaatttgttatgaaacgtcctgacgacattgatctg
atggatgtgtctccaaagcagctcgtatctgttgcggcatcaatgattcctttcttggaa
aatgatgatgctaaccgtgccttgatgggctcgaatatgcagcgtcaggccgtgccactt
gtgcgcgctgaagcaccctttgttgggacaggaatggaagctgttgttgctcgagatagt
ggtgctgcaatcgctgcgaaacgccctggtgtcgttgagcaagttgatgcaacacgtatt
gttattcgtgcgacagaagagacggatgcttctaaatctggtgtcgatatttatacactt
cgtaaattccagagatcaaatcaaaatacctgtatcaatcagaagcctcttgtaaaagtg
ggtgacaagattgacgctggcgacatcatctgtgatggtccgtcaacagatatgggtgaa
ttggctttgggtcgtaacgctctagtggccttcatgccatggaatggttacaactacgag
gattcaatcctgatttcagagcgtatcgttaaggaagatgtcttcacttcaattcatatt
gaagaatttgaagttatggctcgtgatacgaagcttggcccagaggaaatcactcgtgat
attcctaacgtgggtgaagaaggtcttagaagtctagatgaagcaggtatcgtttatatc
ggtgcggaagttcatcctggagatattttggtaggtaagattactccaaaaggcgaaagc
ccaatgactcctgaagaaaagcttcttcgtgcaatctttggtgaaaaagcgtctgatgtt
cgtgatacatcaatgcgtttgcctcctggagtagccggtacagttgttgaggttcgcgtg
tttaaccgccatggtgtggataaagatgagcgcgcaatgacaattgagcgagaagaaatt
gaacgcctgacaaaagaccgtgaagatgagcgcgctattcttgagcgtaacatctatggc
cgtcttaaacctctcttggttggtcgtgaagtaacatctggaaatcgcgatctgaaaaaa
ggatcagtggttacagaggaagctcttgacgcaatgccaaacattcagtggtgggatatt
gccgttgatgatgaagttgcaatgaatgatatcgaagcgatgaagggtcagttcgacgaa
agtcgtgaaagtcttcagaagcgttttgatgaaaagattgaaaaacttcaacgcggtgat
gaattgcttccaggcgttctgaagatggttaaagtcttcgttgctgttaagcgtaaactt
cagccaggtgataaaatggcgggtcgtcatggtaacaagggtgtgatttctcgcattcta
ccacaagaagacatgccttaccttgaggatggaacgccagttgatgtgtgtttgaaccct
ctgggtgtaccatcgcggatgaacgttggtcagattcttgaaacgcaccttgggtgggct
tcacgtggtcttggccgtcagatcgaccagatgcttgacgcttataagcatgaaggtatg
gcaatcgatgcgttccatgacaagttcaaggccgtttacggcgaagatcaatatcagtca
gatgtatctgatcttgatgaagctgagatgctcgaacttgctggcaacctgacaaatggt
gttccaatggggacgccggtatttgacggggctgttgaggccgatatttgtgacctgcta
gaaatggctgggttggataaatccgggcaggtctatctttacgatggccgtactggtgaa
aagttcgaccgaaaagtgacagttggttacatttatatgctgaaattgcatcaccttgtg
gatgataagatccacgcgcgttctatcggaccatactctcttgttacacagcagccgctg
ggtggtaaggcgcagtttggtggacagcgctttggtgagatggaggtatgggcacttcaa
gcttatggtgctgcctatacacttcaagagatgttgaccgtcaaatcagatgatgttcaa
ggtcgtaccaaagtgtatgaagcgattgtcaaaggtgatgatacattcgaagcaggtatt
ccggaatctttcaacgtacttgtgaaagaaatccgttcacttggtctcgatgtcgagctt
ttgaatagcgaagaataa
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