Tuber melanosporum: GSTUM_00005350001
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Entry
GSTUM_00005350001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12600
superkiller protein 3
Organism
tml
Tuber melanosporum
Pathway
tml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00005350001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00005350001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
GSTUM_00005350001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_22
TPR_17
TPR_1
TPR_19
TPR_CcmH_CycH
TPR_16
TPR_12
TPR_14
TPR_8
TPR_11
TPR_7
ARM_TT21_N
ARM_TT21_C
ANAPC3
Motif
Other DBs
NCBI-GeneID:
9187839
NCBI-ProteinID:
XP_002837480
INRA:
GSTUM_00005350001
UniProt:
D5GAX8
LinkDB
All DBs
AA seq
1253 aa
AA seq
DB search
MRSSRGRWTLTLTLRSNWLLFTKPCMDDRTKCQTVVDKIVPFVKEKGTVAQQKRALRVLL
PESPIFGYLEGRIPHPSHTLGKLIHLVEEEEKVKINKEIANRRSRLGAVLGQVTLEVRKE
VYGNSPLEDLYQELINWSDDEEVRREADTKLLQHCYEKLLAFPKEKKPMLRNKVWKLADG
LVILKYPYELAWHIVIEWKDCENIGEHDVNVLREYHRSHFAKFGLKKQKSSRSALAFRIV
GEYCTMLEEYESVVDITRRGIKSMAADYSYTGLALQKNSDSMKVILARALIHYQSPKHHD
EAKALFGDVLQRNSKYGSALVGLGLILEEQHNYVDAADFLGQALALDPGDLKIMSEAAWC
DVLRGNFLEGLSRLKGCLGQITGVDARSRDFKAQVLWRIGQALWGSDEQCRADRSGPYHY
FRSAIESNQNFAPAYTSLGIYYQDIEGNSGRADRCFQKAFEISAGELEAAERLARNFAES
REWELVEIVARRAAEADKKRSVPGKGVSWPHSAIGVVELNAQNFSLAIPAFRAALSTSPN
DFHSLVGLGEAYTSAGRYVSALKVFLRAEALDPTNWFAKYMLANVRREIGEYEEASIGYR
AVLELRPKEFGVLVALSETQLASAWHDIEAGYFGRAADSAVESLEVAQKISGERPDAFNL
WRIVGDCCSVFSWIQSLVNRMPRGLVVQILKTEIDLTEFDILSEVDGVGSQALGDSEVDG
LTLCLNMAILAYKRAIYASAEDRHAHAVAWFNLGCAEYRSYVILPDKPMRHRMAAIRCFK
RTIKLEPGNHEFWNALGVATGELNPKVAQHALVRALYINEKNARVWANLATLYLLQNDIQ
LANEAFSRAQSADPEYALAWVGQGIIASLTGNEADAQDLFEHAFEIADSSSSLVKRRFST
ATFDKVIQLQYESGLVSLVGPIFALQKLRQEISDEPITLRLAALFGERVKDFVSASEKLE
VVCEKVEQKYETTESEEDLVCYAQAKADLARVKLGQEDYEAAVENATLALDISGEISRLE
DCRLSAHLTAGLGYYYSGNMDESLEMFKAALNESSENPDVVCLLSQVLWAKGGDEERDVA
RKLLFTCIERNPDHLQSIMLLGAIGILDNNEDVLEAVMDDLQAVRGREGLIKASKQQVDS
LLTKMAQLQERDDAIAVATTSIFIQPSLSSAWNNLAKLTDGNDHVMAMALKVAQESKALD
AEELSFAYAQQGIMSCNQRAIIIAPWKVDGWVNLVEDVQAAALPRSAVDSSWY
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgagaagttcgaggggaaggtggactcttacattgacgctgcggtcaaattggctacta
tttacgaagccatgtatggatgaccggacgaagtgtcagacagtggtagataaaatagta
ccttttgtgaaggagaaaggaacagtagcacagcaaaaacgtgccttgcgagttcttctt
ccggaaagtccaatatttggatacctggagggccgtataccccatccttcgcataccctc
ggaaaactgattcaccttgtagaagaggaggaaaaggtgaagataaacaaggagattgcg
aaccggaggtctcgacttggcgccgtgcttggccaagttacgttagaggttaggaaggag
gtttatggcaattctccgttggaagatctataccaagagcttatcaattggtcggacgat
gaggaagtaaggcgggaggcagataccaagctgctacaacattgttatgagaaactctta
gcctttccaaaagagaagaaaccgatgctcagaaacaaagtctggaaactggccgatggg
ttggtgatccttaagtatccgtatgagttagcgtggcatattgttatcgagtggaaggac
tgcgaaaatattggtgagcatgatgtgaatgtattaagagaatatcaccgttcccacttc
gctaaatttgggttgaaaaaacaaaagagctcacgatcagcacttgctttccgcatcgtg
ggtgaatactgcactatgcttgaggaatatgagtctgttgtcgacattacaaggcggggt
atcaaatcaatggccgccgactacagctacacagggctcgcacttcagaaaaattcagat
tctatgaaagtaattctggcaagggccttgattcattaccagtctccgaaacatcacgac
gaagcaaaggctttattcggggatgtgcttcaacggaattcaaagtatggatctgctctc
gttggtttaggcttgatccttgaggagcagcataattatgtcgatgctgccgattttcta
ggacaagccttggctttagaccctggtgatttgaagataatgtcggaggcagcgtggtgt
gatgtgcttaggggaaatttcttggaagggttgagtaggttgaaggggtgtttgggacag
ataactggtgttgatgctagatcacgcgatttcaaagcccaagtgctatggagaatcgga
caggcgctttggggttctgatgaacagtgtagagccgaccggagtgggccttatcattac
tttagatctgcaattgagagtaatcagaactttgcaccagcctataccagtctgggaatt
tactaccaggacatcgaaggaaattcgggcagggcagacagatgttttcagaaggcattt
gagatctcagctggagaattggaggcagccgagcgtcttgctagaaactttgccgagagc
cgggagtgggagttggttgagattgtggcaagaagggccgctgaagccgataagaagaga
tcggtaccagggaagggtgttagttggccgcatagtgctattggtgttgtagagctcaac
gcccagaacttttctttggctatacctgcttttcgagctgctttgagcacttcacctaac
gactttcattcgttggtgggcctaggagaggcatatacatcagcgggaaggtacgtttca
gccttgaaggtcttcctccgagcagaggcccttgatccgacaaattggttcgccaagtat
atgttggccaacgtaaggcgtgagattggtgaatatgaggaggcgtctattggttatcgt
gcggtgcttgagttaagaccgaaggagtttggcgttcttgttgccttgtcagagacccaa
ttggcctctgcatggcatgatattgaggccggatatttcggacgtgctgcagatagtgcc
gttgaaagcttggaagtcgcgcaaaagatttccggagagaggccagatgccttcaatctc
tggaggattgttggagattgctgttcagtctttagctggatacagagtttggtaaaccgc
atgcctaggggtttggttgtgcagatactcaagaccgaaatcgacttgaccgagtttgac
atcctttcagaagttgatggtgttggttctcaggccttaggcgattccgaagttgatggt
ctcaccttgtgtttgaatatggcaatactggcgtacaagagggctatttatgccagcgcg
gaggataggcatgcgcatgccgtcgcatggttcaacctaggctgtgcagaatatagatcc
tacgttattttacccgataagcccatgagacataggatggcggccattcggtgctttaag
aggactatcaagcttgagcccgggaatcatgaattctggaatgcgctaggtgttgctaca
ggggagctcaatcccaaagtagctcaacatgctcttgtgagggcattatatattaacgag
aagaatgctagggtttgggcgaatttggcgacattatatctcttgcagaatgatatacag
ttggcaaatgaggcattctctagagctcagagcgccgatcctgagtatgcgctggcgtgg
gtcgggcaaggcatcattgcttcgttgacaggtaacgaagcagatgcgcaggacttattt
gagcatgcctttgagatagcggacagttcttcctcacttgtgaaacgtcgattttcaacg
gcaacatttgataaggtcattcagttgcaatacgaatctggactggtttctctggtaggg
ccaatatttgcattgcaaaaactacgacaagagatatccgatgagcctattacgctccgc
ctagcggcactatttggcgagcgtgttaaagactttgtatcagcctcagagaagctcgag
gtcgtctgtgaaaaggtggagcaaaaatacgagactacagagtcagaggaggacctggtt
tgttatgcacaagcgaaggcagatcttgcccgggtcaagctcggccaggaggactacgag
gcagcggtagagaatgccactcttgctttagatatctccggggagatatcgagactagaa
gattgccggctgtcggcacacctcacggctggtttgggatattactattctggaaacatg
gatgagagcttggagatgttcaaggctgcgctgaatgagtcttcggaaaacccagatgtg
gtctgtttgctttctcaggttctctgggcgaaaggcggggatgaggagagggatgttgca
aggaagctgttatttacttgtatcgaaagaaaccctgaccatcttcagtctataatgctg
ctcggagccatcggaattttagacaacaatgaagatgtcttggaagccgttatggatgat
ttacaggctgttcgaggtagagaaggtttaatcaaggcttcaaagcaacaagttgatagc
ctactcaccaagatggctcaactccaggaacgagacgacgctatagcagtagccacaaca
tccatcttcatccagccatctctttcgagcgcatggaacaatctggcaaagctaactgat
ggaaatgatcacgtcatggcgatggcgctcaaggtggcgcaggaaagcaaagcgttagac
gcggaagaactgtcatttgcctatgctcaacagggtattatgagctgtaatcagagggca
ataatcattgctccatggaaggtcgatgggtgggttaaccttgtggaggacgttcaggct
gctgccctgcccagatcagcggtggattctagctggtattga
DBGET
integrated database retrieval system
