Tenacibaculum mesophilum: F9Y86_03890
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Entry
F9Y86_03890 CDS
T06242
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tmp
Tenacibaculum mesophilum
Pathway
tmp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tmp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F9Y86_03890 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmp03021
]
F9Y86_03890 (rpoB)
03400 DNA repair and recombination proteins [BR:
tmp03400
]
F9Y86_03890 (rpoB)
Enzymes [BR:
tmp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F9Y86_03890 (rpoB)
Transcription machinery [BR:
tmp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F9Y86_03890 (rpoB)
DNA repair and recombination proteins [BR:
tmp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F9Y86_03890 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Biotin_lipoyl
RnfC_N
AGA2
Motif
Other DBs
NCBI-ProteinID:
QFS27584
LinkDB
All DBs
Position
complement(866751..870560)
Genome browser
AA seq
1269 aa
AA seq
DB search
MATINTTERINFASSQLGADYPDFLDIQVKSFQDFFQLQTKAEERGEEGLYKTFMDNFPI
TDTRNQFVLEFLDYFVDPPRYSIQECIERGLTHSVPLKARLKLYCTDPEHEDFETIVQDV
YLGTIPYMTNSGTFIINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIE
FATDINQVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKAGLKKVLGRK
LAARVLKTWHEDFVDEDTGEVVSIERNEIIFDRDTIIEKEHIDEIIEAGAKTVLLHKEDN
QQADYAIIHNTLQKDPTNSEKEAVEHVYRQLRNAEPPDEETARGIIEKLFFSEQRYSLGE
VGRFRMNTKLQLNEDLDQKVLTKNDIITIIKYLIELINSKAEVDDIDHLSNRRVRTVGEQ
LAGQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTN
PLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVYA
KVNNMGFIETPYKKVDNGSVSSEEPIYLSAEEEEGMKIAQSNLPVANDGKIESERVIARE
EGDFPVENPEAINYMDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPESP
IVGTGLERRVAKDSRILINAEGAGVVEYVDANKITIKYDRTEEERMVSFDSDEVSYDLIK
FRKTNQGTNINLKPIVKVGDRVEEGQVLCEGYATQKGELALGRNMKVAFMPWKGYNFEDA
IVISEKVVREDIFTSIHIDEYSLDVRDTKLGAEELTNDIPNVSEEATKDLDENGMIRIGA
EVNPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVINKKLFK
RAVKDKNKRARDKEAIAALEASYVSKFEELKDVLVEKLFNLVSGKTSQGVYNDLGEEVLP
KGKKFTQKMLNSVEDFTHLSGTWTTDKDLNQLVVELVHNYKIKVNDLQGVLRREKFTISV
GDELPAGILKLAKIYVAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVL
NPLGVPSRMNIGQIYETVLGWAGQKLGQKYATPIFDGAKIDQINALTDEAGIPRYGHTYL
YDGGTGKRFDQPATVGVIYMIKLGHMIEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGE
MEVWALEAYGASSILREILTVKSDDVLGRAKTYESIVKGEAMPEPGLPESFNVLMHELKG
LGLDVKLEE
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
ttggcaacgataaatactactgaaagaattaacttcgcgtcatcgcagttaggagctgat
tatccagactttttagatattcaggtgaagtcttttcaagatttcttccaattgcaaact
aaagctgaagagcgaggagaagaaggtttgtataaaactttcatggataacttcccgatt
acagatacacgtaatcaatttgtattagaatttttagactactttgtagatcctccaagg
tatagcattcaagaatgtatcgagcgtggattaactcacagtgtacctctaaaagcacgt
ttaaaattatattgtactgacccagaacacgaagatttcgaaacaatcgttcaagatgtg
tatttaggtacaattccttatatgacaaactctggtacctttattattaatggtgcagaa
agagttgtagtgtcacaattacaccgttcaccaggtgtattctttgggcaatctttccac
gctaatggaaccaagttatactctgcaagagtaattccattcaaaggttcttggattgaa
tttgctaccgatatcaatcaagtaatgtatgcttatattgatagaaagaaaaaattacca
gtaacaacgttattcagagccataggttttgaaagagataaagatattttagagattttt
gatttagctgaagaagtaaaagtttctaaagctggattaaagaaagtattagggcgtaaa
ttagcagcaagagtattaaaaacttggcatgaagatttcgtagatgaagatacaggagaa
gttgtctctattgagcgtaacgaaatcattttcgaccgtgatactattatagaaaaagaa
catattgatgaaataattgaagcaggtgcaaaaacagtcttgttacataaagaagacaat
cagcaagctgattatgccatcattcacaatacattacaaaaagaccctacaaactctgaa
aaggaagctgtagagcatgtatatagacaattacgtaatgctgaaccgccagatgaggaa
actgcaagaggtattattgaaaaattattcttctcagagcaacgttatagtttaggtgaa
gtaggacgttttagaatgaatactaaacttcagttaaatgaagatttagatcaaaaagta
ttaactaagaatgatatcattacaatcattaagtacttaattgaattaatcaattcaaag
gctgaagtagatgatatcgatcacttatctaatcgtcgtgttagaactgttggtgagcaa
ttagcaggtcaatttggtgtaggtttagctcgtatggcacgtactattcgtgagagaatg
aatgttcgtgataatgaggtctttactccaatcgacttaattaacgctaagacgttatct
tcagtaattaactccttctttggtaccaaccagttatctcaatttatggatcaaacaaat
ccattagcagagattactcataagcgtcgtttatcagctttaggacctggaggtttatca
cgtgaaagagcaggtttcgaggttcgtgacgttcactatacgcattatggtcgtttatgt
ccgattgaaacacctgaaggaccaaacattggacttatttcttctttagcggtttatgct
aaagtaaataatatgggattcattgaaactccatacaaaaaggtagataatggttcagtc
tcttctgaagaaccaatttatttatcagcagaagaagaagaaggaatgaaaattgctcaa
tctaatttaccagtagcaaatgatggtaaaatagagagcgaaagagttattgcacgtgaa
gaaggagattttccagtggaaaaccctgaagcaattaattatatggacgttgctcctaat
caaattgcttcgatttcggcatcattaattcctttcttagagcatgatgatgcgaaccgt
gcactgatgggatcgaacatgatgcgtcaagcagttccattattacgtccagagtctcca
attgttggtactggtttagaacgtagagtagcaaaagattctcgtatcttaatcaatgct
gaaggagcaggagttgtagaatatgtagacgccaataaaataacaattaagtacgatagg
acagaagaagagcgcatggttagctttgattctgatgaagtgtcgtacgacttaattaag
tttagaaaaacaaaccaaggtactaatatcaacttaaaaccgattgtaaaagtaggtgat
agagtagaagaaggtcaagtactttgtgaaggatatgcaacacaaaaaggagaattagct
ttaggtagaaacatgaaagtagcctttatgccttggaaagggtataactttgaggatgcg
attgtgatttctgaaaaagtagttcgtgaagatatctttacttctattcatattgatgaa
tattcattagatgttcgtgatactaaattaggagctgaagaattaacaaacgatattcct
aatgtttctgaagaggctacaaaagacttagatgaaaatggaatgattcgtattggagca
gaagtaaatcctggtgatattttaattggtaaaattacaccaaaaggagaatctgaccct
accccagaagaaaagttattacgtgctatctttggtgataaagcaggagatgtaaaagat
gcatcattaaaagcgtctccatcattaagaggagttgtaattaacaaaaaattattcaaa
cgcgcagtaaaagataagaataagcgtgctcgtgataaagaagcaatagcagctttagaa
gcatcttatgtgtctaagtttgaagaattaaaagatgttttagttgaaaagttattcaac
ttagtatcaggaaaaacttctcaaggagtgtataacgacttaggagaagaagtattgcca
aaaggtaaaaagtttacacaaaaaatgttaaactctgtagaagactttacacatttaagt
ggaacttggactactgataaagacttaaatcaattagttgtagaattagttcacaattac
aagattaaagtaaacgacctacaaggagttttacgtcgtgagaaatttacaatctctgta
ggagacgaattaccagcaggtatcttaaaacttgctaaaatttatgtagctaagaaacgt
aaattaaaagtaggagataagatggcaggacgtcacggaaataaaggtattgttgcacgt
attgtacgtcaagaagatatgcctttcttagaagacggaacaccagtagatatcgtatta
aacccattaggggtaccatctcgtatgaacattggtcagatttatgaaactgttcttgga
tgggcaggtcaaaaattaggtcaaaagtatgcaacaccaatttttgatggtgcaaaaatt
gatcaaatcaatgctttaactgatgaagcaggaataccacgttacggacacacatattta
tatgatggaggtacaggtaaacgtttcgatcagcctgcaacggtaggagtaatttatatg
attaagttaggtcacatgattgaagataagatgcacgcgcgttctattggaccttactca
ttaattactcagcaaccattaggaggtaaagcacagtttggaggtcagcgttttggtgag
atggaggtatgggcacttgaagcatatggtgcatcaagtatcttacgagaaatcttaact
gttaagtctgatgatgtattaggtagagcaaaaacttacgagtctatcgttaaaggagaa
gcaatgccagaaccaggtttaccagaatcatttaacgtattaatgcacgaacttaaaggt
ttaggattagacgttaaattagaagaataa
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