Tremella mesenterica: TREMEDRAFT_29558
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Entry
TREMEDRAFT_29558 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K10845
TFIIH basal transcription factor complex TTD-A subunit
Organism
tms
Tremella mesenterica
Pathway
tms03022
Basal transcription factors
tms03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
TREMEDRAFT_29558
09124 Replication and repair
03420 Nucleotide excision repair
TREMEDRAFT_29558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tms03021
]
TREMEDRAFT_29558
03400 DNA repair and recombination proteins [BR:
tms03400
]
TREMEDRAFT_29558
Transcription machinery [BR:
tms03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
TREMEDRAFT_29558
DNA repair and recombination proteins [BR:
tms03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
TREMEDRAFT_29558
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb5
PSV_ORF131-like_dom
Motif
Other DBs
NCBI-GeneID:
18492006
NCBI-ProteinID:
XP_007003837
JGI:
Treme1_29558
LinkDB
All DBs
Position
Unknown
AA seq
73 aa
AA seq
DB search
MSTYSDPYAVKLTSGVLITCDSAAKQILLHIDSQRDGPSKFILRDIDETHVLVKKEHIEI
MKDLLQVEVSFLS
NT seq
222 nt
NT seq
+upstream
nt +downstream
nt
atgagcacttattccgatccatatgctgtcaagctaacttccggcgttctgatcacttgt
gactcggcagctaaacaaatattattacatatcgattctcaacgcgacggaccgagtaaa
ttcattttacgggatatcgatgaaacacacgttttggtcaagaaagaacatattgaaatt
atgaaagatcttcttcaagttgaagtcagttttctctcttga
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integrated database retrieval system