Tremella mesenterica: TREMEDRAFT_71017
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Entry
TREMEDRAFT_71017 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K12600
superkiller protein 3
Organism
tms
Tremella mesenterica
Pathway
tms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TREMEDRAFT_71017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_71017
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
TREMEDRAFT_71017
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_16
TPR_19
TPR_17
TPR_8
TPR_14
TPR_12
TPR_CcmH_CycH
TPR_11
TPR_7
TPR_9
ANAPC3
TPR_6
TPR_20
TPR_15
TPR_21
ChAPs
Sel1
Motif
Other DBs
NCBI-GeneID:
18498449
NCBI-ProteinID:
XP_007002097
JGI:
Treme1_71017
LinkDB
All DBs
Position
Unknown
AA seq
1527 aa
AA seq
DB search
MSTKKALKAIKAQLEEGNHEAALYQATNLLKSVDKDAPEVAQILVFRGLALTHAQKWDEA
EKSYFQAYRIDPTNPLAGHGLRKLYEKQEAWDKLCRFLEIQVQASFDSRDPDKTATALQE
LLTLRQTHGPQEKVLEILILLVSDGPLVSLLQSATPPSGTYVPFPTPLYPPPSLSVQPTL
PRELPHILHLVGSLPLALNLLIRAKSIVHTIIEQKVEAGRKRLGAGSPSEVRRNVEAEIL
GGSEGMAMVDLLEEVARHPNTDEEVRRDVEVEQFIFWRNLAASTQWVLLLPLQCSLTDQT
RSEGKPTTAQNAAPTTLRVSNVETASTFNLPEPSLFVRHTPPTVSKGEAVQKASALAEGF
VLLNVTTPGAEEAWSWVIEGTDQKDIFYDLESLNKFVLAFPSTPLSDFTEDYCRWFHLPL
PDADDEGDENPSSEALKDHSSIKKRKASRPGKTKGPNARDRRKARRLAEKEGTLAEDVDQ
EEKEELIAEMTKLLRKLPKSVFAHRVMTRVSIQEEDWQNAVTYAEKSRILLKELESERGT
TMPLTRLSIDTALGIALVPYYPPKHHARANRLLSDVLSQQMNNLEARFARARILQTEGKW
AEAREEFQIMLDSGPEEREAVAAREEIGWCLVNEDKLSEGRDVLEEVVQRRETRKEQDSN
DDEAYARARGWYRLGRCEWLIGDEENRQHAEEWFMASCRALPSYAPAYTSLGISYESNIP
PDEDRALKCFQKAFELDATEVEAARRLVIGYADDDEWALVRGIAMRVMEGEGGVEGIAGG
DVLNAKGRFAPKNGWAWKALGSTEMHYKKYAEATQAFQIALRAEPSDVSTWILLGTAYLK
LGRHMAALKALSHALELDPKAWVAQYNIGETYHQLGAFDKAIEAYQSVLDLEPPSKIGVI
ASLAQSTLSLGRQASSGGFRQRARNAFHDTVTLAADVLRSKQGHRPWTWKTIGDAAFELA
SLETTMEDAQTSATVLKPILKLLVEDDTDRHASVTGLGHTSIFVYAYRAWLLSTDLRVSN
IAIYDLASALHALAISLPGGTDLRTCCLKAAIVIVRKALEHDASDERLWNALGVISSSAG
PALAQHAFIISLELYSKDPIAWTNLGYLYLNLDDLNLASECFVKAQILDPDYAQAWYGQG
IIAYRSFNQTHATELFAHSVTLAGGSLLEANIAHALTIFLPFLDPSSSISKSTSTLHQPL
FALRSYIHNRPKDPMALNLYALMCERIGLSSESIDALVSSAQLLEEEYESTESPQTEHLY
IVVLCNLARVRLSTGNYTEALEGFKNCLELIDGKNGDEESDMRVQCLLGQGISEFWLDKV
DQSLESFEKCLEICQGKEKREEVIVLLARTLWGMGEDGKEVAKDHLMDCLPTTSSQILIA
LTVISLLLSDNDLTSTCLSTLSSLPLQSDDHIPLVLSSHQLIQDNPEGALTILEQAVQHH
PTSLQSRIRLARLLLALGRKEDVSSLLSRWPGQLREDSSLEGQRETLLGIATMDVGRIQR
GVMIRPWKEEGWSGLTYGRGKGYKWAV
NT seq
4584 nt
NT seq
+upstream
nt +downstream
nt
atgtccacaaagaaggcactcaaggccataaaagcccagctggaagagggcaatcacgag
gcagcgctgtatcaggcaaccaacctgctgaaatcagtggacaaggacgctccagaggta
gcccaaatactggtctttcgtggtttggctctcacacatgctcagaaatgggacgaggct
gaaaagtcatactttcaagcataccggattgatcctacaaaccccttagcagggcatggt
ctacgaaagctatacgagaagcaagaggcttgggacaagctctgcaggttcttagagatt
caggtacaggcatcttttgattcaagagatcccgacaaaacggcaactgctttgcaagaa
ctgcttaccctccgtcagacacatggtcctcaagaaaaggtcttggagatactcatactc
cttgtgtcagatggacccctcgtatctctattacaatctgctaccccaccttccggcacc
tatgtcccttttcccactccactataccctcccccttctttgtctgtacaacccactttg
cctcgagaattaccacatatcttgcatctggtaggatctctccccttagctctcaatctc
ctcattcgagcaaaatcaatcgttcacacaatcatcgagcagaaggtcgaggcaggacgg
aaaagactaggtgctggatctccaagcgaggtcagacggaatgtggaggcggagatcttg
ggagggtcagaaggaatggctatggtggatctattggaagaggtagcccggcatccgaat
acagacgaggaagtcagacgagatgtggaagtggagcaatttattttttggcgtaaccta
gcagccagtactcagtgggttttattactacccttacaatgctcactcactgatcaaaca
agatccgaaggaaagcccactacagcacagaatgccgctccaacgaccttgcgcgtatcc
aatgtggagactgcatccactttcaacctaccagaaccgagtcttttcgttaggcatact
ccgcctaccgtcagtaaaggcgaggctgtccaaaaagcttcagctctagccgagggcttc
gtcctgctcaatgtcacgacgccaggagctgaggaggcttggtcatgggtcatagaaggt
actgatcaaaaggacatattttacgatctagaaagtctgaataaattcgttctcgctttc
ccctcgactcccttgtcagacttcactgaagactattgtcgttggttccatctacctctg
cccgacgcagacgatgagggggatgaaaacccgtcttcggaggcgctgaaagatcattcg
agtattaagaagcgaaaggcttcaaggcctggcaagacaaaaggtcccaatgccagagat
cgacgaaaggctcgacgacttgcggagaaggagggtaccctagcggaggacgttgatcaa
gaagagaaagaggagttgatcgctgaaatgacgaaactgctgagaaaacttcccaagtct
gtcttcgctcaccgagtgatgacgagagtatcgatacaagaagaagattggcagaatgct
gtcacctacgctgaaaaatcgaggattttgttaaaagagctcgagagtgagcgtgggacc
acaatgcccctgacacgtctctctattgacactgcactcggtatcgctcttgtaccttac
tatccaccgaaacaccatgctagagccaatcgtctcctctcggatgtcctcagccaacaa
atgaacaatctggaagctcgctttgcccgtgctagaattttgcagactgaggggaaatgg
gcagaagcgcgagaggaattccagattatgctggattctggtcctgaagagagggaagcg
gtcgctgcacgtgaagagatcgggtggtgtttggtcaatgaggacaagctatcagaagga
cgtgatgttctcgaggaggtagtacaacgtcgagaaactcggaaagagcaggacagtaat
gacgacgaggcttacgctagagcaaggggttggtatcgactcggaaggtgtgaatggctc
atcggagacgaggagaatcggcagcatgcagaagaatggttcatggcttcatgtcgtgct
ctaccatcctatgctccagcttacacttcccttggaatctcctacgaatctaacatacct
ccggacgaagatcgtgctttgaagtgttttcaaaaggctttcgagctggatgctactgaa
gtggaagctgccaggagattggtcattggttatgccgacgatgatgaatgggctttggta
aggggtatagctatgagagttatggaaggtgaaggaggggtagaagggatcgcaggtgga
gatgttttaaatgctaagggacgatttgcaccaaaaaatgggtgggcttggaaagctctg
ggatcgaccgagatgcactataagaagtatgctgaggcaactcaagccttccaaatagct
ttacgagcggaaccatcagacgtttctacttggatcctgctcggtaccgcttatctcaaa
ctcggtcgtcatatggccgcgctcaaagctctctctcacgctctcgaactggatcctaaa
gcttgggtcgcacaatataacattggagagacataccatcagcttggtgccttcgacaag
gccattgaagcttatcaatctgttctcgatttggaaccaccctcgaaaattggtgtcata
gcttctcttgctcaatcaaccctgtccctcggtcgacaagcttcctcgggaggattcaga
caacgagcccgcaatgcctttcacgacactgtcacattagccgcggatgttcttcgatcc
aaacaaggtcacagaccatggacgtggaaaacgataggtgatgcggctttcgaactggcc
tcactggaaactacaatggaagacgcgcaaacttctgcgaccgtactgaaacctatctta
aaattgttggtggaagacgatacagatcgacacgcttcagtgacaggtctaggacacacc
tcgatcttcgtatacgcttaccgtgcttggcttttgtcgaccgaccttcgcgtttcgaat
atcgccatctacgatctggcttctgccttacatgctttagccatctccctacctggaggc
actgatctgagaacatgttgtctgaaagctgcaattgtgattgtgcgcaaagcactcgag
catgatgcaagtgacgaaagactttggaatgctttaggtgtaatatcatcttccgcagga
cccgcattggctcaacacgcattcatcatttccctcgaattatattcgaaagatccgata
gcatggaccaaccttgggtatttatacctcaatctcgatgatttgaatttagcaagtgaa
tgttttgtaaaggctcaaatactcgatccggattatgctcaagcatggtatggtcaagga
attatcgcgtatcgttcatttaatcaaacccacgcaactgagttattcgctcattccgtt
actttagcgggtggtagtctactcgaagcgaatatagcacacgctctcaccatcttcctt
cctttcctcgatccatcctcgtcgatttcgaagtcaacatcaacattacatcaaccactt
ttcgctcttagatcatacatccacaatcgaccaaaagatccaatggctctaaacctatat
gcgttgatgtgtgaacgtatcggtctttcatcagaatctatcgatgcgttagtatcttct
gctcaattgttagaagaagaatatgaatctaccgaatctcctcaaacggaacatctatat
atcgtggtattatgtaatcttgcaagagttcgattatccactggaaattacaccgaagct
ctggaggggttcaagaattgtttggagctgatagatgggaaaaatggagatgaagagagt
gatatgagagtgcaatgtttgttaggacaaggtatttccgagttttggttagacaaagtg
gatcaaagtttggaaagttttgaaaaatgtttggagatttgtcaggggaaagagaaaagg
gaagaagtgatcgttttgttagctaggactttatgggggatgggggaagatgggaaggaa
gtggcaaaagatcatttgatggattgtctaccaactacctcgtctcaaatcctcatcgct
ctcacggtcatttccctcctcctttcagacaatgacctcacttcgacatgtctctccacc
ctctcctcccttcctcttcaatccgacgaccacatccctctcgtcctctcctcccaccag
ctgatccaggataatccggagggagctttaacgatattagaacaagccgtccaacaccat
cccacttctcttcaatctaggatacgactagcgagacttttactggctttggggcggaaa
gaagacgtatcatcacttctttctcgatggccaggtcagttaagggaggactcaagtcta
gaaggtcaaagagagacgttattgggcatcgcgactatggacgtgggaagaatacagaga
ggtgtcatgatccgtccgtggaaggaagaaggatggtcagggttgacgtatggtcgtggg
aagggttataagtgggcggtgtag
DBGET
integrated database retrieval system
