Tremella mesenterica: TREMEDRAFT_71251
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Entry
TREMEDRAFT_71251 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K18752
transportin-1
Organism
tms
Tremella mesenterica
Pathway
tms03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
TREMEDRAFT_71251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_71251
03009 Ribosome biogenesis [BR:
tms03009
]
TREMEDRAFT_71251
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
TREMEDRAFT_71251
Ribosome biogenesis [BR:
tms03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
TREMEDRAFT_71251
Pre-60S particles
TREMEDRAFT_71251
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_GCN1
TPR_IMB1
HEAT_EF3_N
Vac14_Fab1_bd
HEAT_2
HEAT_ECM29
HEAT_MROH2B_C
PDS5
HEAT_GCN1_C
Cnd1
MMS19_C
TPR_IPO5
Adaptin_N
TIP120
TPR_DNAAF5
IBN_N
ARM_ARMC5
Motif
Other DBs
NCBI-GeneID:
18498496
NCBI-ProteinID:
XP_007003109
JGI:
Treme1_71251
LinkDB
All DBs
Position
Unknown
AA seq
893 aa
AA seq
DB search
MSWQPTQADLEERLEQLRFVPDFLAYLTYVLIHCVGEQDSHRAVAGLLLKNALVARSGPP
QNEADGRALAYVKATILTGLQDKDQMIRQTVGAVITSLLSNDETGAWPEALDAVTNGMSS
QDPNLVEGVFNTLDKICEDCPHKLDVWVGGQNLLDHIVPQLIKYTAHSTSRIRLYALECL
VNLCEIRAPAISANIDSYIQALFARAGDESSDVRRVVCASLGHVLNHRPDKLVPELNNVV
DYIAYCSKDQDELVALEASEFWLTFSEEQALRDQLRPFLPKITPLLLDGMVYSDYELATL
DADEDDEAVPDRETDIKPRGYSAKTHGAHESNEASASSGPSGKSREAADRAFNEEEDDDD
DDDDFVDDEDYGGEWNMRKCSAAALDVLAVSFGPELMDILLPYLKERLFSGEWVERESGI
LALGAIAEGCIDGLEPHLPQLVPWLLQSLKDSKALIRSITCWTLGRYSSWCVHAFRDDKT
KVFIPTMEGRVQEAGCSAFATLEEEAGSEITPFLEPILRNLTNAFEKYQQKNLLILYDAL
GTLADAVGSALGQPLYLEILMPPLIQMWMKLGDDDEGLVPLLECLSSVAIAAGTAFSPYT
VPVYQRCVQIINTRLQEYQKYESAPDDFDEPDRTYIVVALDLLSGLTQGLGEQIHQLVAT
SQPPLLHLMAVCLTHYEPPIRQSAHALLGDMAISCFPLLKPIMSQFLPTVTEQIIAEPPA
DCVSVCNNATWAVGEIAMQYASDSTELQPFVSALIQRLVPILLSKNSPKSLSENAAVTIG
RLGLACPAVVAPELRTFAQEWCTALWEIKDNEEKDSAFRGFCMMVSINPSGIEHCFVFFC
NAVCKWTNPSAQLNTMFQQILQGFKDGLGPNWEPTLAGFPPVLRDRMRERYGV
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgagctggcaaccaacacaggccgacctggaggagcgccttgaacaactccgtttcgtc
ccagattttctcgcctacctcacctacgtcctcattcactgcgtcggcgaacaagactct
caccgtgcagtcgcgggtcttttactcaaaaacgctctcgttgcacgatctggtccgccg
caaaatgaggcggacgggagagcactggcatacgtcaaagctaccatcttgacaggtttg
caagacaaagatcagatgataagacaaaccgtaggggctgtcatcacttctttactgagt
aatgatgagactggtgcttggccagaagctttggacgcagttacgaatggtatgagttca
caagatcctaatctcgtcgaaggagtctttaacacgttagataaaatttgtgaagattgt
cctcacaagctggacgtctgggtcgggggacaaaaccttttggatcatatcgttccacaa
ctcatcaaatacaccgctcattctacttccagaattcgtctttacgccttggaatgtctt
gtcaacctctgcgaaattcgtgctccagctatatcagccaatatcgattcttacatccaa
gcattgttcgctcgagcgggagacgaatcatccgacgttcgacgagtcgtatgtgcttct
ttggggcatgtactgaatcatcgtccagataaattggtgcccgagcttaacaatgtggtt
gactatatcgcgtattgttcaaaggaccaagacgagctggtcgcacttgaagctagcgag
ttttggctcactttttcagaggaacaagctcttcgtgatcagttacgaccatttcttccg
aaaatcacacctctactcttggatgggatggtttattcggattatgaattggccactttg
gatgcggacgaagacgatgaagctgtaccggatagagagaccgatatcaaacccagagga
tactccgcaaagacgcatggtgctcatgaatccaacgaagcttccgcatcttcaggtccc
agcggcaaatccagagaagcagcagaccgagcgttcaacgaagaggaggacgatgatgat
gacgacgatgactttgtggacgatgaagattacggtggagaatggaacatgcgaaaatgc
tctgcggcggctttggacgttttggctgtttcgtttggacccgaactcatggacatctta
ttaccgtacttgaaagaaagattgttttcgggggagtgggtcgaaagggagagcggtatc
ttagcattaggtgccatcgcagaaggatgcatcgacggtttggaacctcatctaccccag
cttgtgccttggctgcttcaatcattgaaggatagcaaggctctgatacggtccatcact
tgttggactcttggtagatattccagctggtgtgtacatgcctttcgagatgacaagact
aaggtcttcatcccgaccatggaaggacgagttcaagaagcaggctgcagtgcatttgcc
acactcgaagaggaagctggttcagagatcaccccattcctcgaacccatacttcgtaac
ctcaccaacgctttcgagaaatatcaacaaaagaacctgctcatcctatatgatgctttg
ggaactcttgccgacgccgttggatctgcacttgggcaaccactatatcttgagattctt
atgcctcctctgattcaaatgtggatgaagttgggtgacgacgacgaaggtcttgtacct
ctcctggagtgtctgtcctcagtcgccatagccgcaggaacagctttctctccttataca
gttcctgtctatcaaagatgtgttcaaattatcaatacccgtttacaagaataccaaaaa
tacgaaagtgcacccgatgattttgatgaacccgatcggacatacatagtcgtcgctctt
gatctattatcaggtcttacacaaggtttaggtgaacaaatacatcaattagtagctacc
agtcaaccacctttacttcatcttatggcagtatgtctaacccattacgaacctcctatt
cgacaatccgctcacgcgttattgggtgatatggcaatatcttgtttcccacttcttaaa
cctatcatgtcacaatttctacctaccgtcactgaacaaataatcgctgaaccacctgcg
gattgtgtgagcgtttgtaacaacgctacttgggcagtaggtgaaatagccatgcaatac
gcaagcgactcaacagaattacaacctttcgtatctgctttaatccaacgtttggtgcct
attctacttagcaagaattcaccgaaaagtctatcggaaaatgccgctgtgactataggt
agattaggtttggcttgtccggctgtggtagctccggagctgaggacttttgctcaagaa
tggtgtaccgctttatgggagattaaggataatgaagagaaagattcagcttttagaggt
ttttgcatgatggtttctatcaatccttcgggtattgagcattgcttcgtattcttctgc
aacgcagtttgtaaatggacgaacccatccgctcaactgaacaccatgtttcaacagatt
cttcaaggattcaaagatggtctaggaccaaattgggaaccaactctagcaggattcccc
cccgtccttcgtgatcgtatgagggaacgatatggcgtttag
DBGET
integrated database retrieval system
