Tremella mesenterica: TREMEDRAFT_72862
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Entry
TREMEDRAFT_72862 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tms
Tremella mesenterica
Pathway
tms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TREMEDRAFT_72862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_72862
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TREMEDRAFT_72862
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
TREMEDRAFT_72862
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
18498836
NCBI-ProteinID:
XP_007002161
JGI:
Treme1_72862
LinkDB
All DBs
Position
Unknown
AA seq
2237 aa
AA seq
DB search
MALPPPGLGGGGPRAGPPPGFASMALNNGPATGGGANDSSALAIVKAQIVFLLSSMTEES
FERTSKELKSHFLRRAAMACQAIMQEAIRHYQQYMDDPAAPPLELPKSSNSALAWRLLLV
EAVRAAKDISLAPHFAVVMLSSYQSTALPLPHLRILGLSPSLDFSLSAYALATPHIFPPT
HPAHESVVNLLRQSLGRTLDLLRAPNLPFWYIDTIPHHPPIIDDLTLQEARTIILAVYPK
SSSSGQNSPSRSPSPANPTSPHPSFLSSPQRGALLNALTIKFSSPAIILQTLSALSPGGR
PGSAEAIPLEDILFELGENLTQDEGTVEAVITRWWARWLLEGPREEVEQRVTEEASRTVL
GLCEGMRDGRITDVHGVVKGLSAIDTINWSHVLKSFDAPSNILAQHSSGQLLLALLLIPP
QNPHPPIAGLYPAAADQPMWANLSNLVAITQRLTSIPPDVCPIFTIDNPPSPTSFARVVD
PPINESSMSKVARQQAREIQGAGVFNALGLLQVLFAACSVGDGDQDGSELANAASQILER
ATNLAPELVLLATEKLPQPLPAAIAELQTRLLALYLSTPPANITASQLVFHQMWQNNPDY
LMSILLEYYGEDEHNLSRVVEIGIEIKILDKLLASSNLHFSFDVAALVSNKDYLNLEEWL
SDGVAVNGSDFLHGIFDFVEHKIRLESDHSHLPESSPPLLDTLGEDVYSIFIRVVRNADN
LTPDDIARFKNLRTEILILQPRLLNLRPGNNDEHGFHVAKFNAEMRERVDEMYRRMYSEE
IKLDDIVADLKKCKESEDDTDRELFDCALHSLFDEYKFVRSYPPKELAMTGILFGAIIDE
RLVKDTPAFVATRYVLDACKSSPQEKFYQFGINALSVLRRSLVDFPGLCRSLLEIPAIHE
SHPVLVNEITSALAEREEMDQQGGIKLAFPALKLPILIEEGDDEFREPDPKKRDAIMFII
NQVSASNFETKSQDLAKLLEDQWSRWFAHYFVDVRVSLEPNMQPTYVEIMDALHSAVFEK
HVLWETYRKARDLLNSEQTLASSTERVLLKNIAIWLGKITLARNKPIRIRELSLKDLLIQ
GYDNKRLIVALPFVCNVLACCRYSIVFHPPNPWLVGILSLLVEFYHYAELRLNLKFEIEL
LFSALEIQLASIEPANVLRVHVPPPAPGPDVPNRLELELHRAMSEMIGGTQRFNEPPVND
AMARIHQIQSEQAVAAAHEAFLRRVDELISQLPEQLIFSPDYPIFQAPTLKRVVHHSIDR
SIREIITPVVERSVTIAGISSRDLVSKDFGMEGDPAKLRHAAHLMVQNLAGSLAMVTCKE
ALRTSMIGNVRAMLAQNGYTDENMPDMMIHGVVNDNLGPACAIVRIAAMEKAAKDIDVNL
GPQYAARKAHRESRNQQPFYDPASFSVVISNAALPDPLRLRSGGLSAAQARVYEDFSEPP
KLAQASGPMNGDHLTASYRELSIQDSLIPGDIKHGPSPRPYLTDEVERVASPASVTSQAK
MLEKFHDIVGEIERLIAEAQVDDISELPPNHEIRSLVHAIVLRAAQSSDREATVLMSAQK
TVQLLYKSKSPLGRDVYTLMLQRLCELSGKVGKEVRQWVIYSDDLRKLNVPVTVNLIRAS
FVQAAELDAQIANLLLRSSTPEVITYAAELIRHCCLIDHPLVPRNGFAATLTALVNLHDS
GQPMRVVDDLLDDLRVGRDRLRDTPVISNGDDEHKPAVDAKLSERLAHFFLDWVRVFRSS
KNPEAAFVPYIQYLQKENILSGEDVSSAFYRTAIKTAIDLDSSRNADGQLQFFGTDSLAK
LIILIVKNYGDKSGAASVSRAVYYYNKIMTIMSYSLVQTHLEHGENFDQRPWTRFFTSML
SELGSLERGLPDTFHGCMKHFANSLGITQPVYAPRFAFGWFSIVTHRLFMPKMLQGPRDD
GWSEYHRCLMWMLRFLSPMLKTGDMTASSRFLIRATLRLMLVLLHDFPDFLSEFYHTLST
AIPTTSVQMRNVVLSAFPSSEAPLPSHYASLAELVPLMQRFPTVRSDYVSILNSGNLKAG
IDQFVRNGQPTPQILAGELKNRIAVKTLASDGTPTITWNHTMLHAVTFYLGTSAIGRRAS
QSGHASFDPRAGEVTLLTHLAIVLPPEGQYYLLSVIADQLRYPSAHTLFFISYVLYLFSA
SCRSATETPNDLAERIARILLERVLVKKPHPFGLVVAFIELLDNDQYGFFDQGFIKAEPE
VAALFSQARGNFKRHQV
NT seq
6714 nt
NT seq
+upstream
nt +downstream
nt
atggcgctccctcctcctggtctgggtgggggaggacctcgtgccggtcctcccccgggg
ttcgccagtatggctcttaacaatggaccagccactgggggtggagccaacgattcatca
gctctagccattgtcaaagctcagattgtattcttgctctcctcgatgacagaagagagc
tttgaaagaacatcgaaagagctcaaaagccattttcttagacgagcggcaatggcatgt
caagctatcatgcaagaggccatacgacattatcaacagtacatggacgatccggctgct
cctccattggagttacccaagagttctaacagtgcattggcatggcgacttctcctcgtg
gaggctgtgagagcagctaaggatatctctctcgctcctcatttcgccgttgtcatgctc
tcctcatatcaatccactgctctacccttacctcaccttcgcattctcggtttatctcct
tcactagatttttctctctccgcctacgccttagctactcctcatatctttccacctact
catccagcgcatgaatcggttgtcaatctcctccgacaatctcttggcagaaccctcgat
cttctccgcgctcctaatctcccattctggtacatagacacaatacctcaccacccaccc
atcattgacgatctcacattacaagaagccagaactattatactcgccgtttatcctaaa
tcatcttcctctggacaaaactcaccttcccgatctccttcacccgcaaacccgacctct
ccccatccgtccttcctttcatccccccaaagaggagctttactcaatgctctgacgatc
aaattttcatcaccggctatcatccttcaaaccctctcagctctctccccagggggcaga
ccaggaagtgcagaagctatacctctcgaggatatactgttcgagcttggagaaaacctc
acacaggatgagggaacagttgaggcagtgatcacgcgatggtgggcgcgatggctgctt
gaaggacctcgagaagaggtagagcaaagagtgacagaagaagccagcagaacagtgttg
ggcttatgcgagggaatgcgggatggacgcatcacagatgttcatggagtggtcaaaggt
ctgagtgcgatcgacaccatcaactggtctcacgtgctgaagtctttcgacgcaccttcc
aatatcctcgctcaacattcgtccggacagcttttgctcgccctgttgttgatcccgccg
caaaacccacatcctcccattgcgggtctctatcccgccgccgccgatcaacctatgtgg
gccaacctatcaaacctggtcgcaatcactcaacgcttgacttccatcccaccagacgta
tgccctattttcacgatagacaatcctccttctcctacctccttcgcccgcgttgtcgac
cctccaatcaatgaatcctccatgagcaaagtggcccgtcaacaagctcgcgagattcag
ggagcaggcgtcttcaatgccctcggtctgttgcaagtgctgttcgctgcgtgcagtgtg
ggtgacggggaccaagatggcagtgaacttgccaatgctgcttctcagatcctggagcga
gccaccaaccttgcaccggagctggtcttgctggcaactgagaaactccctcaacctctt
ccggctgcaattgctgagctgcaaactcggctactggctttatatctttctaccccaccc
gccaacatcactgcctcacaacttgttttccatcaaatgtggcaaaacaacccagactat
ctaatgtcaatattactcgagtactacggagaggatgagcacaatctgagcagagtcgtg
gagatcggcatcgagataaagatcctggataaactccttgcctcaagtaatttgcatttt
tcattcgatgttgccgccctcgtatcgaacaaagactacctgaatctggaagagtggctt
tccgacggtgtcgccgtgaacggctctgacttcctgcatggcattttcgactttgttgaa
cacaaaatccgattggaatcagatcatagtcatcttcccgaaagctcccctccccttctt
gacacgctaggagaagatgtctactccattttcatccgggtagttcgaaatgccgacaac
ctcacccccgatgacattgctcgcttcaaaaaccttcgaaccgaaatcctcatcctccag
ccgcgtttgctcaacttacgaccgggcaacaatgacgagcatggcttccatgtcgccaaa
ttcaatgccgaaatgcgagaacgggtggacgaaatgtaccgacgcatgtacagcgaagag
atcaaattggacgatatcgtcgcagacctcaagaaatgcaaagagtcggaagacgataca
gatcgggaattattcgattgtgctcttcattcgcttttcgacgagtacaaattcgttcgc
tcatatcctcctaaagaactggcgatgactgggatactgttcggcgctatcatcgacgag
cgattagtcaaggacacaccagctttcgtagctacgcgatacgtactggatgcttgcaag
tcatctccacaggagaaattctatcagttcggtatcaacgccctcagtgtccttcgccga
tcactggtcgattttccaggtctgtgtcgatcccttctcgagataccggccatacatgag
tctcatccggtcctcgtgaacgagatcacatccgcgttggccgagagagaggagatggac
caacagggtggcatcaaactcgctttccccgctctcaaactaccaattctcatcgaagaa
ggcgatgacgagttcagggagccagatcccaaaaaacgcgacgcaatcatgttcatcatc
aatcaagtctcagcttcgaattttgagaccaagagccaagatctggcaaaacttcttgag
gatcagtggtcgcgatggtttgcacattactttgtcgatgtgcgggtcagcttggaaccc
aacatgcagccgacgtatgttgagattatggatgcccttcattctgccgtcttcgaaaaa
catgttctgtgggagacttaccgcaaggctcgcgacctgttaaactctgagcaaacactc
gcctcctctaccgagcgggtcctcctgaaaaatatcgcgatatggttggggaaaattacc
ctcgcccgtaacaaaccaatcagaatccgcgaattgtccctcaaagacctcctcattcaa
ggctatgacaacaagcgactcatcgtggcattaccatttgtctgcaatgtactcgcctgc
tgtcgctactcgatcgtttttcaccctcccaatccgtggctggtcggtattctcagcttg
ttggtcgagttctaccattatgccgagcttcgactcaatctcaaattcgaaatcgagttg
cttttctctgcgttggagatccaactcgcgtcaatagagccggccaacgttctcagagtt
cacgtccctccacctgcacctggtccagatgtgcccaatcgtcttgaactcgagctccac
agggcaatgtcagagatgataggtggcacacaacgcttcaatgagccgccggtcaacgat
gctatggctcgcatacaccagatccaatccgaacaggctgtcgctgccgcacatgaagcg
ttcctgcgccgggtagacgagttgatctcgcaacttccagagcagctcatcttcagccca
gactacccaatcttccaagctcctaccctgaagcgggttgtgcatcactcaatcgatcga
tccattcgggagatcattacgcctgtcgtcgaacgctcagttaccatagcgggcatctcg
tctcgagatctggtatcaaaagattttggtatggagggcgatccggcaaagctccgtcat
gctgcccatttgatggtccagaatctggccggcagcctggccatggtcacttgcaaagag
gctctgcgcaccagcatgattggcaacgtgcgagccatgctagcgcagaacggatacaca
gatgagaacatgccagacatgatgattcacggtgttgtcaacgacaatcttggtccggct
tgcgccatcgttcgaattgctgctatggaaaaggcagccaaagatatcgacgtcaatctc
ggtccgcaatacgctgcgaggaaggctcacagagagtcgcgaaatcaacaaccattttac
gaccccgcttcgttctctgtcgtcatttccaacgccgcactaccggatcctttgaggttg
cggagtggcgggctcagtgctgctcaggctagggtatatgaggatttcagtgaacctccc
aagctggctcaagcatctggccccatgaacggcgatcatcttacggcatcttatcgtgaa
ctgagcattcaagattcgctcatccccggtgacatcaaacatggaccttcacctcgacct
tatttgaccgacgaggttgaacgggtggcatcacctgcttcagtcacttctcaagccaaa
atgctcgaaaaattccacgatatagtcggtgagatcgaacgactcattgccgaagctcaa
gtcgacgacatctcggagcttccgcccaatcacgagatccgttcgttggttcatgccatc
gtgctccgagcagcgcagtcctcggacagggaggcgactgttttgatgtctgcacagaag
accgtgcaactcttatacaagtccaaatctccgctcggaagggacgtctataccctgatg
ctgcagaggttgtgcgagttgtccggcaaagtgggaaaagaagtcaggcagtgggtcata
tactcggacgatctgcgaaaactcaatgtgcccgtgactgtcaatctcatcagagcgtca
ttcgtccaagccgcggagctggatgctcaaattgccaatctcctccttcgctcttccact
ccagaagtcatcacgtacgccgcggaacttattcgtcactgttgcctcatcgatcatcct
ctggtcccccgcaacggctttgccgccactcttacggctctcgtcaatctccacgacagt
gggcagcccatgagggtcgtcgatgacttactggatgatctccgtgtcggacgtgatcga
ttacgtgataccccagttatatccaatggcgacgacgaacataaacccgctgtcgatgcc
aagttgtccgagcgactcgcccacttcttcctcgactgggtacgggtcttcagatccagc
aagaatccagaagctgctttcgttccgtacattcagtaccttcagaaagagaatattctc
agcggcgaagacgtctcctcagccttctaccgtacggccatcaagacagcaatcgacctg
gactcttctcgtaacgccgatggacagctacaattctttggtaccgattcgttggcaaaa
ctcatcatcctcatcgtcaagaactatggcgacaagagcggggctgcgagcgtttcacgc
gcagtgtactattataacaagatcatgaccatcatgtcgtactctctcgttcaaactcat
ctagagcatggcgagaatttcgatcaacgcccatggacgaggttcttcaccagcatgttg
agcgagctaggatctctggaacgaggtctaccggacacattccatgggtgcatgaaacac
ttcgccaactcactcggcatcactcaacccgtatatgccccaagattcgcctttggttgg
ttttccatcgtcacgcacaggcttttcatgcccaaaatgctgcaaggaccgagagacgac
ggttggtcggaatatcatcgatgcctcatgtggatgcttcgtttcttatcacccatgctc
aagacgggtgatatgacagcttcgtcaagattcctcatccgtgctacccttcgtcttatg
ctcgttctccttcatgatttccctgacttcttatccgagttctaccatacgctctcaact
gccatccccaccactagcgtccagatgcgaaacgtcgtcctctccgctttcccatcgtct
gaagcgcctctccctagtcattacgcctcccttgcggaacttgtcccgctcatgcaacga
ttccctacagttcgctcggactacgtctccattctcaattccggcaatctcaaagctggc
atcgaccaattcgtacgaaatggtcaacccaccccacagatcctcgctggtgaactcaag
aaccgcatagccgtcaagactctcgcatcggatggaacaccgaccatcacatggaatcat
accatgcttcatgctgtcaccttttacctcggtacttcagctatcggtcgtcgtgcgagc
caatcaggtcatgcatcattcgacccgcgtgcgggtgaagtcactcttctgactcatctg
gctatagttcttccgccagaaggacaatactatcttttatctgtcattgcggatcaactt
cgttatccctccgctcacactctattcttcatttcttacgtcctctatctattttccgcc
tcttgccgttcagccaccgagacgccaaatgatttggccgaacgtatcgcccgtatcctc
ctcgagagggttttggtcaagaagcctcacccgttcgggttggtggttgcgttcatcgag
ttgctcgataatgaccaatacgggtttttcgatcaaggttttatcaaggcagaaccggaa
gtagcggcactcttctcgcaagctaggggtaattttaaacgccatcaggtgtaa
DBGET
integrated database retrieval system
