Tetraodon nigroviridis (spotted green pufferfish): GSTEN00018821G001
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Entry
GSTEN00018821G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K12600
superkiller protein 3
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTEN00018821G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00018821G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
GSTEN00018821G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_14
TPR_19
TPR_11
TPR_8
TPR_9
TPR_16
TPR_CcmH_CycH
TPR_17
TPR_12
ANAPC3
ARM_TT21_C
TPR_7
HAT_Syf1_CNRKL1_N
Fis1_TPR_C
TPR_15
ARM_TT21_2nd
Motif
Other DBs
NCBI-ProteinID:
CAG00393
UniProt:
Q4SG39
LinkDB
All DBs
Position
12
AA seq
1526 aa
AA seq
DB search
MSSKEIKTELKSAREAIKNKEFKEALKHCKAVLKLEKNNYNAWVFIGLAASELEQPDQAQ
TAYKKAVELEPEQLLAWQGLANLYEKTDQWDFKDELPSVYQKLVDLYASSDKNKCYELIK
KLSAIYQSDKEYLKLAKLWLQHLHLKEDEAVDKKELLQLWQQMAQLLLDCLSEEEQQSEI
QQYLITAFEKALSLMDAKPGEEHKKVSVDYIRCLSKLPKEEVKMKEACESMLSLYPNQSY
PLEVLCSHYLDTGAQDEVAVSCFSRLLNMAPNSGLGHLGLGTKALQEGRFKDAIKDLQQG
LKKISLKTGWYSLAEAQFKIHKYTDSAESCSQGLEVCGSGDKEQREKLLRLKLEALVRSG
GEKAANQAMETFSQVSGAEKDPVLLMLKGRAHLNKGQVDQAVQVSSELMSSSPNLAQGFL
LRGLVQIAQGHQHLAEESFQKAISQSPECGEYYFLLGKLYWDMGEATRNDRSKAHTHFLK
AAKLDPNLGCAFRYLGHYYQEVACDHVRARGCYKKAFDLDIDDAESGAAAVDLSMKSDDM
DTALAVLESVVENATPGSAKWAWIRRGLYYLKVGEHQKAIADLQAALRADPEDWVCWECL
GEAYLNRRSFTAALKAFGKAQQLHPSSIYSVYQAAAIKQTLGKFKEAIVEYLQITAQQDY
VPALKGLGECQLSLAKSLIEDCRDGGAVDLIQQAIKNLFRAVELRPDLTCLWKLLGDACT
AVSTVSPNRARVVVPAPLAGLVPNAQGQLLNQAQALQIGERCYARALKLMPEVPSLWHDL
GLNYYHQSCLSCVSEADQNVACLLLEKAQECLKKAIMLDSENYNFWNALGVISMSKGLEN
FALAQHCFIKSIEVEQNLAHKAFKVAQSLEPLYVNCWIGQALIAEKVGSYDAMDLFRHTT
ELSIHMEGVKGYAYWVCSTLLDKSNRDSELYRYNIVQMNAISAAQVALTKYTERIQCDPV
AFTMLGYLNEHLQLKRQAFQSYQRAVELLQSTSSEEELAFALGNYGRALSTLGQWDKAEQ
VYKSTQLQELSDLVGLALTYCRAGRVAESTAGEEKNTFQVFGLDCQNWERERAVGSCFSA
YERASAVASTEKEKAYILTAQALLQHQQGNLDLAKTLLFKCSMLKEPVSESLLCLCALGL
VHGDATLASAALAELLKQGAPSGNVVEQRCLLTCALLALQRNYAAVQREASRAVHSNPGN
PSLWALLSRVIPQYYPRKANGGATAGHVACLSSMTQGKGALLYSGVNQLANGSHSGEDSH
RNALKMMQRAVLLCPDDPATWAALMAACHTENTCCYLSGSRPRRQGMGQSLMAIVSEKVC
DVEEIERPLAQSLEGWVLQQAVTGLMMAGQLEQAEALCSQVLSVSPEHPGVLLLLRQVQC
QQLLGAAEHTVLPDSALEQLNKAVMINPTNLGAWHVGVQSKEWTDLILEATTEVLKLGSA
PFALLFQALLQFATKMAARETRRLLERLIYVSSEDVPVTAVQVARWYLLRHLHAKSDQEL
MNVLLQHAKANGDERLLKFHSLLISS
NT seq
4581 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtaaagaaataaaaacagaactgaaaagtgcccgagaggccatcaagaataaa
gaatttaaggaggcactaaagcactgtaaggctgttttaaaacttgagaagaacaattat
aatgcatgggtcttcatcggccttgcagccagtgagctggagcaaccggatcaggctcag
acagcctataaaaaagccgttgagctggaaccggagcagctactagcgtggcagggtttg
gcaaatctgtatgagaagactgatcagtgggatttcaaagatgaactgcccagtgtgtat
cagaagcttgttgacctgtatgcaagctctgacaaaaacaaatgttatgagctgatcaaa
aaactgtcggctatctaccagtcggacaaagaatatttgaagttggcaaaactttggctg
cagcatcttcatctgaaagaggacgaggctgtggacaagaaagagttactgcagttatgg
caacagatggcccagctcctcttagactgcctcagcgaggaagagcagcaaagtgaaatt
caacagtatttaatcacagcatttgaaaaggccttaagtctcatggatgctaaaccagga
gaggaacacaagaaggtttcggttgactacatcagatgcctttccaaacttccaaaagag
gaggttaaaatgaaggaggcatgtgagtccatgctgtccctataccccaaccaaagttat
ccacttgaagttctctgttctcactatctcgatacgggtgctcaagatgaggttgcagtc
agctgtttttcaaggctcctgaatatggcacctaacagtggattaggtcatctgggtctg
ggcaccaaagctctgcaagaagggaggtttaaagatgccattaaggatctacaacaaggg
ttgaagaaaataagcctgaagacaggatggtacagtcttgctgaagctcagttcaaaata
cacaaatatacagacagcgctgaatcatgctctcaaggtctggaagtctgcggttctgga
gacaaggagcaaagagaaaaactgctcagactgaagctggaagccctggtgagaagtgga
ggagagaaggctgccaaccaggcgatggagacattttcacaggtctctggtgccgagaaa
gacccagttcttttaatgctgaaaggccgtgcacacctaaacaagggacaagttgatcaa
gcagtacaggtgtcatcagaattgatgtcctccagtcctaatctggctcagggttttctc
ctgagaggacttgtacagatcgcacagggacaccagcatctggcagaagagagttttcaa
aaggcaattagccagagtccagagtgtggagagtattacttcctgttaggaaaactttac
tgggacatgggagaagcaactcgtaatgacaggagcaaagcccatacacactttctaaag
gctgcaaaattggacccaaaccttggttgtgctttccgctaccttggacattattaccag
gaggtggcttgtgatcatgtgcgggcacgtggctgctacaagaaagcctttgacttggac
atagatgatgccgagtctggggctgctgcagtggatctcagtatgaagagtgacgatatg
gacacagccttagcagttctcgagtcagtcgtcgagaacgccaccccaggctcagctaaa
tgggcttggatcaggagagggctttactacctgaaggttggagagcatcaaaaagctata
gctgatctacaggctgctctgagggcggaccctgaagactgggtgtgttgggagtgttta
ggcgaggcctatctgaaccgcagaagcttcacggcagctttgaaggccttcggaaaggcc
cagcagcttcaccccagttctatctacagcgtctaccaggctgccgctatcaaacagacc
cttgggaagttcaaagaggccattgtagaatatttgcaaatcacagcccaacaagattat
gttcctgctcttaaaggtcttggagagtgccagttgtcccttgctaaaagtctaatagaa
gactgtcgagatggcggagccgttgatcttattcagcaagcaatcaagaacctcttcaga
gctgtggagctgcgaccggatctgacctgtttgtggaaactgctgggagatgcctgcact
gcagtgagcaccgtgtcaccgaacagagcccgggtggtggtgccagcccctctggctggg
ctggttcctaacgctcagggtcagctcctgaaccaggctcaggcacttcagattggtgag
agatgttatgctcgggccttgaagctgatgcctgaagtccccagtctctggcatgacctc
gggcttaattattaccaccagtcctgcctgtcctgcgtctcggaggcagatcagaatgtc
gcatgtcttttactagaaaaggcccaagagtgtctaaaaaaggctattatgctggacagt
gaaaattataacttctggaatgccttaggagtgatttcaatgagcaaaggtctggagaac
tttgctcttgctcagcattgcttcattaaatctatagaagtagagcaaaatcttgctcac
aaggctttcaaggttgcccagtccctggagccgctctatgtcaactgttggattggacag
gcactgatagcagagaaagttggaagctatgacgccatggatcttttcagacacaccact
gaactcagcatacatatggagggagtgaagggttatgcctactgggtgtgttccaccctg
ttggataagagcaacagagactctgaactttaccgctacaatatcgtccagatgaacgcc
atttcagcggcacaggttgcactcaccaagtacacagagaggatccagtgtgaccccgtt
gcattcaccatgctcggatatttaaatgagcatctgcagctgaagaggcaggctttccaa
agttaccaaagagctgttgaactgcttcagtccacgtcctcagaagaagagctggctttt
gctttgggcaattatggccgcgctttaagcactttaggtcagtgggacaaagcggagcag
gtttataaatccacccaactgcaggagctcagtgacctggtcgggctggctctgacctac
tgcagggctggacgcgtcgcagagagcactgctggtgaggaaaagaacacgttccaagtc
tttgggttggattgtcaaaattgggagcgtgaacgagctgtgggttcctgtttttcagcc
tatgaaagggcctcggcagtggcttccaccgagaaggagaaggcttacatcttgacagct
caggccctgcttcagcaccagcagggtaacctagacttagctaaaactctgctgtttaaa
tgctcaatgttaaaggagcccgtttccgagtctctgctgtgtttatgcgctctgggcttg
gtccacggtgacgctacgttagcatctgccgccttagctgagctgctgaagcaaggtgcc
ccctccggtaacgtcgtagagcagcggtgtcttctcacctgtgccttgctggccctgcag
cgcaactacgccgcagtgcagagagaggcatccagagccgtgcacagcaaccctggaaac
ccatccttgtgggctctgctgtccagagtgataccacagtactaccccaggaaggcaaac
ggtggcgcaacagctggtcacgttgcctgcctgtccagtatgacccaaggaaagggggcg
ctgttgtacagcggtgtgaaccagctcgccaatgggagccactctggagaggacagtcac
agaaatgcactgaagatgatgcagagagctgtacttctttgtcctgacgatccagcaacg
tgggcagcattaatggccgcctgtcacacagaaaacacttgctgttatctgtcgggttct
cgtcccagaaggcaaggaatggggcaatctctcatggcaatagtgtctgagaaagtgtgt
gatgtggaggaaattgagcgaccactggctcagtctctagagggatgggtgctgcaacag
gcggtaactggtctcatgatggcaggacagctggaacaagctgaagctctgtgctcacag
gtgctgagtgtttctccagaacatccaggagtgctcctcctattgaggcaggttcagtgt
caacaacttttgggcgctgctgagcacactgtcctcccagattctgcgttggagcaactg
aacaaggcggtgatgatcaaccccaccaaccttggtgcatggcatgtgggtgtccaaagc
aaggagtggacagacttgattctggaagccaccactgaggtcctgaagctgggttcagcg
cctttcgcactcctcttccaggccctgctgcagtttgcaaccaagatggccgcaagagaa
acacggcgtttgctggagaggctgatttacgtctcctctgaagacgtcccggtcacggcg
gtgcaggtggcccggtggtacctcctcagacatttacatgccaaaagtgaccaggagctg
atgaatgtccttttgcaacacgccaaagcgaatggagatgaaaggctgctgaaatttcat
tcgttgctcatctcgtcataa
DBGET
integrated database retrieval system
