Tetraodon nigroviridis (spotted green pufferfish): GSTEN00034624G001
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Entry
GSTEN00034624G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTEN00034624G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00034624G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSTEN00034624G001
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
GSTEN00034624G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
NOT1_connector
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-ProteinID:
CAG12368
UniProt:
Q4RGW4
LinkDB
All DBs
Position
undetermined
AA seq
2705 aa
AA seq
DB search
MIKDGQPLGFVENEGFGEPLKLIVASYVLPSRKIVNRHGPEADRHLLRCLFSHVDFSGDG
KSSGKDFHQVFGRVFSRSNANLNSTTEFVAACLVFSSPVSVLLRFLCLLFVKTQFLIQEC
VLLISKPNFISTLCYAIDNPLHYQKSLKPSAHFFTQLSKVLKLSKVQEVIFGLALLSSSN
TDLRAFGECVRLGTSGPTAVRSPLQPACPVLCVSAAQFVKQKLPDLLRSYVDADLGGNQE
GGFQDIAIEVLHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPE
KRDIPMDRILPDSGELAKTMMESSLAEFMQEVGYVFCASLDECRSIILQYGVREVTACQV
ARVLGMMARTHSGLSDGIPLQVSGLLPRLSGDGARQAQPDQTLLWGLLQSISSPGSGIWS
DGKDKNDVSQPHTWNVEVFIDIVKEVNPSLNFKEVTYELDHPGFLIRDNKGLHIVVYAVQ
RGLGMEVFPVDLIYRPWKNAEGQLSFIQHSLMSPEVFCFADYPCHAVAIDILKAPPEDDN
KEIATWKSLDLVESLLRLSEVGQYEQVKQLFGFPIKHCPDMLVLALLQISTSWHTLRHEL
ISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHSMAEWYMRGEQYDQAKLSRILD
VAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKWLTDKIREHGEPFIQACVTFLKR
RCPSIMGGLPPDKDQPKSSQLPPETLATMLACLQSCAGSVSQELSETILTMVANCSNVMN
KARQPPPGVMPKGRAPSTSSLDAISPVQMDPLSGMGSLNLGGTATSHTQNLPGFPTSLSS
AFSNPQSPAKAFPALSNPNPSTPFGGIGSLSSQLSAGPLGSGIGSSLGMQTVNTDPFGSR
KMSTPGLNPPTFQQSKMKASDLSQVWPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVD
EVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVT
YMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKNRLKDYPQYCQHLASIAHFLQFPHH
LQEVTLFCASVAPPKYIEYGQQSRDPPVKMQGSITTPGSLALAHVQAQSQQPGGPKAPQP
GQPSTLVTTATTTTTTAKTTTITRPTPSSFKKDVPPSINTTNIDTLLVATDQTERIVEPP
DNVQEKIAFIFNNLSQSNMTQKVEELKETVKDEFMPWVSQYLVMKRVSIEPNFHSLYSNF
LDTLKNPEFVKMVLTETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILY
TVSIRDPEQAAFVSPSLLLGGLRMVMAPPGDSLRLSAAEQRTHVPLTDYPLQRSARLAFH
SVNARSFPRQDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQNPWTMAIM
NVLAELHQEHDLKLNLKFEIEVLCKNLSLDINELKPGNLLKDKDKLKNLEEQLSAPKKES
KPPEESLPVSTAAPPSAPAASTASCAATGPPTPQFSYHDINVYALAGLAPHININTSIPL
LQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFALDSEESRMRLAAH
HMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRTPTPQQREMMEEAAARISQDNCEL
ACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVS
LSSRFLVAVDVQQAPESQCVCVRVCVCVCACVRAQVGGVDAKQLAVYEEFARNIPGFLPS
NDLSQPTGFLAQPMKVSEEEDVAVAPGPQRLTLTCGVSPQQQAWATDDVAQIYDKCIADL
EQHLHAVAPGLAMNPLTQALRSLLETVVLARNSRDGIAALGLLQKVSSLAGEHLTAGLSW
ALFTWSPPFSRLWKAFWMPQAALMPTCCCATGSVTSWSSKPCRMDAPTDRSGATSRSPGQ
TLAVNGPLVCGTPAATPVNMHVPWSGVCVKVCVLLRCLIECRDEYKYNVEAVELLIRNHL
VNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADFFHTIETLMRTCA
HSRANAPEGLPQLMDVVRSNYEAMIDRANGGPNFMMHSGISQASEYNDPPGLREKAEYLL
REWVNLYHSAAAGRDSNKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAE
QQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVQQRRGAEGEP
HVSLGAAARPRGGLVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETI
NFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDL
FKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNL
ILSAFPRNMRLPDPFTPNLKVDMLSEINLAPRILTNFTGVMPSQFKKDLDSYLKTRSPVT
FLSELRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGNAPSMSTITHSAHMDIF
QNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLER
LIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVME
GTGAS
NT seq
8118 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagacggccagccactcggctttgttgaaaatgagggattcggggagccgctg
aagcttattgtagcctcgtatgttctaccaagcaggaagattgttaatcgtcacggtcct
gaggcagacaggcatctactacgctgtctcttctcccacgtggattttagtggagatggt
aaaagcagtggaaaggactttcaccaggtatttggtcgtgttttcagccggtcaaacgct
aacctgaattctactactgagtttgtggcagcctgtcttgtgttttcctcacctgtttct
gttcttctccgtttcctctgtttgttgtttgtcaagacacagtttctgatccaggagtgt
gtgttgctgatatcgaagccaaattttatctccactctgtgttacgccatcgacaatccc
cttcactaccagaagagtttgaagccgtcggcccactttttcactcagttgagtaaagtt
cttaaactcagcaaggtccaggaggtgatcttcgggcttgctttgctcagttccagcaac
actgacctgcgtgctttcggtgagtgtgtccgtctcggcacgtccggtcccacagctgtc
cgatcgccgcttcaacccgcttgtcctgtgttgtgcgtctcagccgcccagttcgtcaag
cagaagcttccagacctcctgcgatcatacgtggacgccgatctcggaggaaaccaggaa
ggtggcttccaggacatcgccatagaggtgttgcacctgctgctctcccatctactcttt
ggtcagaagggagccagcggggtggggcaagagcagatcgacgccttcctcaagacactt
tgtcgagatttcccccaggagcgctgtcccgtggtgctcgcaccactgctgtaccctgaa
aaacgggacattcccatggacaggatcctgcccgactcaggagagctagctaagaccatg
atggaaagttctcttgccgaattcatgcaggaagttggctacgtcttctgtgctagcttg
gacgagtgcagaagcatcatcctccagtatggggtgagggaggtgacggcctgccaggta
gcccgggtcctgggcatgatggcccgcacccactcgggcctctcggacggcatcccctta
caggtgagcggcctcctgcctcggctcagcggggacggagccaggcaggcgcagcccgac
caaacactgctttggggtctcctgcagagcatctccagccccggcagcgggatctggagc
gacgggaaagataagaacgacgtctcgcagccgcacacctggaacgtggaggtgttcatc
gacatagtgaaagaagtgaatcccagcctgaacttcaaagaggtcacgtatgagctggat
cacccgggcttcctcattcgggacaacaaaggcttgcacattgtggtctacgcggttcag
agaggcttgggcatggaggtcttccccgtcgacctgatctaccgaccctggaaaaatgcg
gagggacagctgtccttcattcagcactccctgatgagcccagaggtcttctgctttgcc
gactacccctgccacgccgtggctatcgacatcctgaaggccccaccggaggacgacaac
aaggagatcgccacatggaagagtctggacctggtggagagcctgctccggctctcggag
gtgggccagtacgagcaggtgaagcagctcttcggcttccccatcaaacactgcccagac
atgctggtgctggcgctgctgcagatctccacctcctggcacacgctgcgccacgagctc
atctccaccctgatgcccatctttcttggcaaccaccccaactctgccatcatccttcac
tacgcctggcatggacagggccagtctccttccatccgccagctgatcatgcattcgatg
gcagagtggtacatgagaggagagcagtacgaccaggctaagctgtctcgcatcctggac
gtggcccaggacctgaagtctctctccatgttgctgaacgggaccccgtttgccttcgtc
atcgacctcgctgcccttgcgtctcgccgtgaatacctcaaacttgataaatggctgacc
gacaagatcagagaacacggagagcccttcatccaggcctgcgtgaccttcctgaagcgg
cgctgtccttctataatgggaggtcttcccccagacaaggaccagcccaagagctcccag
ctgccccctgagaccctggccaccatgctggcctgcctgcagtcctgtgccgggagtgtg
tcccaggagctgtcggagaccattctcaccatggtggccaactgcagcaacgtgatgaac
aaagcgcgccagccgccgccgggggtcatgcccaaggggcgtgcccccagcaccagcagc
ttggacgccatttctcctgtgcagatggacccgctgtcggggatgggttccttgaacctg
ggcggcacagctacgtcacacacccagaacctgccagggttccccacctcgctgagctcc
gccttcagcaacccccagtctccagccaaggccttcccggctctgtccaaccctaacccc
agcaccccgttcggaggcattggcagcctgtcctcgcagctttctgcagggcctctgggc
tccggcatcggctccagcctgggcatgcagacggtgaacacggacccctttggcagcagg
aagatgagcacgccaggcctgaacccgcccacctttcagcagagtaagatgaaggcctct
gacctctctcaggtgtggcctgaagccaaccagcactttagtaaggagatagacgacgag
gccaacagctacttccagcggatctacaaccacccgcctcacccaaccatgtccgtggat
gaggtgctggagatgctgcagaggttcaaggattccaccatcaaacgggagagggaagtc
ttcaactgcatgctccgcaatttgtttgaggagtacaggtttttccctcagtacccggac
aaggagctgcacatcaccgcctgcttgttcgggggcatcatcgagaagggcctggtgacc
tacatggccctgggcctggccctgcgatatgtcctggaagccttgaggaagccgtacggc
tccaaaatgtactactttggaattgctgcactggatcggttcaagaacagactgaaggac
tacccgcagtactgtcagcacctggcttccatcgcacacttcctgcagttcccccaccat
ttacaggaggtaacccttttctgcgcctccgtcgccccacccaagtatattgagtatggt
caacaatcgagggaccccccagtgaagatgcagggctccatcaccactcccggcagcctg
gcgctggcacacgtgcaggcccagtcccagcagcctggaggccccaaggctccccagccg
ggtcagcccagcaccctggtcaccaccgccaccaccaccaccaccacggccaagaccacc
accatcaccaggcccacgcccagcagcttcaagaaggacgtgcctccctccataaacaca
accaacattgacaccttgttggtggccaccgaccagacagagaggattgtggagcctcca
gacaacgtccaggagaagattgccttcatcttcaacaacctgtcccagtccaacatgacg
cagaaggtggaggagctgaaggagacggtgaaggatgaattcatgccctgggtgtctcag
tacctggtgatgaagcgtgtcagcattgaacccaacttccacagcctctattccaacttc
ctggacactttgaagaacccagagtttgtcaaaatggtcctaactgagacctacaggaac
atcaaggttttgttgacgtcagacaaggcagcagccaacttctctgatcgctccctgctg
aagaacctgggccactggctgggcatgatcacgctggccaagaacaagcccatcctttac
accgtaagcatcagggacccagagcaagcagcatttgtctctccttctctgttgctggga
ggcttgcgtatggtgatggctccgcctggggacagcctccgtctgtcagctgctgagcag
aggacacatgtccccctgacagattaccctctccagcggtcagctaggctagcattccac
tctgttaatgcccgttccttcccccggcaggacctggaagtcaaatccctgctcctggaa
gcatacgtgaaagggcagcaggagctcttgtacgtggttccctttgtggccaaagttttg
gagtccagtctgaggagcatggtcttcagaccccagaacccctggaccatggccatcatg
aacgtcctggccgagctgcaccaggagcatgacctgaagctgaacctgaagttcgagatc
gaggtcctgtgtaagaatctgtctctggacatcaacgagctgaagcctggaaacctgctg
aaggacaaagacaagctgaagaacctggaggagcagctgtcggcgccgaagaaggagagc
aagcctccggaggagagcttaccggtctccaccgcagctccgccctctgcgccagctgca
agcacagcctcgtgtgcagccacggggcccccgaccccccagttcagctaccacgacatc
aacgtgtacgccttggcaggcctggccccacacatcaacatcaacaccagcatccccctg
ctgcaggcccacccgcagctgaagcaatgtgtgcggcagtcggtggagcgagcggtccag
gagctggtgcaccctgtggtggatcgctccatcaagatcgccatgaccacctgcgaacag
atcatcaggaaggactttgcgctggactcggaggagtcgcgcatgcgcctggcagcccac
cacatgatgaggaacctgacggctgggatggccatgatcacgtgccgcgagccgctgctc
atgagcatcgccaccaacctgaagaacagctttgcaacggcgctcaggaccccgaccccc
cagcagagggagatgatggaggaggctgcagccaggatttctcaggacaactgtgagctg
gcttgctgcttcatccagaagacggcggtggagaaggccgggcccgagatggacaagagg
ctggccacggagtttgagctgcggaagcatgcacgccaggaggggcggcggtactgcgat
cccgtggtgctgacctaccaggcagagcgcatgcccgagcagatccgactcaaggtcagc
ctctcctccaggttccttgttgccgttgacgtccagcaggcacctgaaagccagtgtgtg
tgtgtgcgtgtgtgtgtgtgtgtgtgtgcgtgtgtgcgtgcgcaggtgggaggggtggat
gccaagcagctggccgtgtacgaggagtttgccaggaacattccgggattcctgcccagc
aacgatctttcccagcccaccggcttcctggcccagcccatgaaggtgagtgaggaagag
gatgtggccgtggctccaggcccacagcgtctcactctcacctgtggcgtctccccacag
cagcaggcctgggccaccgacgacgtggctcagatctacgacaagtgcattgcagacctg
gagcagcaccttcatgccgttgctccaggcctggccatgaaccctctcacccaggctctg
cgcagcctgctggagaccgtggtgctggccaggaactccagggatggcatcgctgcgctg
ggtctcctgcagaaggtcagctctctggcaggggagcacctcacggctggcctgagctgg
gctttgttcacctggtctcctccgttctccaggctgtggaaggccttctggatgccacaa
gcggcgctgatgccgacttgctgctgcgctacagggagtgtcacctcctggtcctcaaag
ccctgcaggatggacgcgcctacggaccgcagtggtgcaacaagcagatcaccaggtcag
acgctggctgtgaacggtcccctggtgtgtgggacacctgcagccacacccgtgaacatg
cacgttccatggagtggcgtgtgtgtgaaggtgtgtgttctcctcaggtgtctgatcgaa
tgtcgtgatgagtacaaatacaacgtggaggcagtggagcttctaattcgcaaccatctg
gtgaacatgcagcagtatgacctccacctggcacagtccatggagaacgggctgcactac
atggcggtggcctttgccatgcagctggtgaagctgctgctggtggacgagcgcagcgtc
agccacgtgacggaggccgacttcttccacaccatcgagactctgatgaggacctgcgca
cactcccgcgccaacgcgccggaggggctgccccagctgatggacgtggttcgctccaac
tacgaagccatgatcgaccgcgccaacgggggacccaacttcatgatgcattcggggatc
tcgcaggcctccgagtacaacgaccctccaggcttgagagagaaggccgagtacctgctc
agagagtgggtcaacctgtaccactcggccgccgccggcagggacagcaacaaggccttc
tctgcatttgtaggccagatgcaccagcagggcatcctgaagacggacgacctgatcacc
aggttcttccggctgtgcacggaaatgtgcgtggagatcagctaccgagcgcaggccgag
cagcagcacaacccggcagccagcgcggccatcatcagggccaagtgttaccacaacctg
gacgccttcgtcaggctgatagcgctgctggtcaagcactcgggcgaggccaccaacacc
gtcaccaagatcaacctcctcaacaaggtgcagcagcggcggggagctgagggagagccg
cacgtcagcctgggtgctgcggccaggccgcggggcggcctggtgctgggtatcgtggtc
ggagtgctgatccaggaccacgatgtgcggcagacagagttccagcagctgccctaccac
cgcatcttcatcatgctgctgctggagctgaatgcacctgagcacgtcctggagaccatc
aacttccagacgctcaccgccttttgcaatactttccacatcctgagacccaccaaggcg
cctggctttgtgtacgcctggctggagctcatctcccaccgcatcttcatagcgcggatg
ctagcgcacacgcctcagcagaagggctggcccatgtacgcgcagctgctcatcgacctc
ttcaagtacctggccccgttcctgaggaacgtggagctcaacaagcctatgcaaatcctc
tacaagggcacgctgcgtgtgctgctggtcctgctgcacgacttcccagagttcctgtgc
gactaccactacggcttctgcgacgtcattccacccaactgcatccagcttcgcaacctc
atcctcagtgccttcccgcgcaacatgaggctccccgacccgttcacccccaacctgaag
gtggacatgctgagtgagatcaacctagctccgcgcatcctcaccaacttcaccggggtc
atgccctcccagttcaagaaggacctggactcctacctgaagactcgctcaccggtgacc
ttcctgtcggagctgcggagcaacttgcaggtgtccaacgagccggggaaccgctacaac
atccagctgatcaacgcgctggtgctgtatgtgggcacgcaggccatcgctcacatccac
aacaagggcaacgcgccgtccatgagcaccatcacacactctgcacatatggacatcttc
caaaacctggctgtggatttggacacggaggggcggtacctcttcctgaacgccattgcc
aaccagctgcgctaccccaacagccacacccattacttcagctgcaccatgctctacctg
tttgctgaggccaacacggaggccatccaggagcagatcaccagggtcctgctggagcgg
ctgatcgtgaacaggccacacccctggggtcttctcattaccttcatcgagctcatcaag
aatcctgccttcaagttctggagccacgactttgtgcactgtgccccggagattgagaag
ctgttccagtcggtcgcacagtgctgcatgggacagaagcaggcccagcaggtgatggag
ggcaccggagccagctag
DBGET
integrated database retrieval system
