Thermoleptolyngbya oregonensis: HNI00_02845
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Entry
HNI00_02845 CDS
T09452
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
tog
Thermoleptolyngbya oregonensis
Brite
KEGG Orthology (KO) [BR:
tog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tog03016
]
HNI00_02845
Enzymes [BR:
tog01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HNI00_02845
Transfer RNA biogenesis [BR:
tog03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HNI00_02845
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
WOB42222
UniProt:
A0AA97BKQ9
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All DBs
Position
670384..672426
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AA seq
680 aa
AA seq
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MDKGTLVEFRPSGEGGAGATRPRRLAVVDRPEGKKLWVVIDERGQAHTLHPRDITYTVAN
QTYKPSEISAFLKEVQPYLDPDSLEVAWELLMEDGETVDPAGMARLLFSDDSPPLQYAAH
CLLSDDRLYFKQKGDRYEPRPAAQVKELKHQLSVTLQRQQEWEGFLARLRQVLAGESLEW
AAGDRPWLEALERFATLGEEASHRTPALEVLSALGRPETPEEAFQLLVDLRLWHPHENLF
LRRSQIPIQFPSRVLEVAQRCLIDPPADSSRDRLDLTHLKVYTIDDESTREIDDGLSVEF
LPDGQHRIWVHIADPSRWLTPGDALDLEARRRCITLYLPTGMTPMFPPELATGPMSLVQG
QLCHAFSFGVLVDADGAIQSYEMHPTLIKPTYRLTYDDVDEMLQLGIQAEPELEILFQTA
SQRQRWRMQQGAISIQMPESSIKVTEDDEIRIDVFEESASRILVSEMMILAGEVAGRYGE
AHGLPLPFRGQEQPELPPEEELMLLPPGPVRGCAVRRCMKRSEMGVTPIRHAGLGLDVYV
QVTSPIRRYADLLAHFQIKAHLQGDPLPFSPEEMTELLQGIGSTTYEMVQVERQTNRYWS
LEYLRRNANEVWPALVLRWLREHENFGLVLLEDLGLEMAMRFSRTVEVGDRLDVKVSYVD
PRRDLIQFVEIDQAVPQAAS
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggacaagggaacattagttgaatttcggccgagcggcgagggcggagcgggggctact
cggccgcgtcgtttggccgtggtcgatcgcccggagggaaaaaagctgtgggtggtgatc
gatgaacgaggccaggctcatacgctgcatccccgcgacatcacgtacaccgttgcgaat
caaacctataagccgtccgaaattagcgcctttctgaaagaggtgcagccctaccttgat
cccgatagcctggaagtggcgtgggaattgctgatggaggatggggaaacggttgacccg
gcgggaatggcgcggctgctgttttccgatgacagcccgcccttgcagtatgctgcccac
tgtctgctgtcggacgatcgcctctatttcaagcagaagggcgatcgctacgagccgcgt
cccgcagcgcaggtaaaggaactcaagcatcagctttcggtcacgctccagcggcagcag
gagtgggaaggttttttggcaagattgcgccaggttttggcgggcgaatcgctggaatgg
gcagcgggcgatcgcccctggctagaagccttggagcggtttgctacgctaggagaagaa
gccagccaccgcaccccggcgctggaggttttatcggcgctgggtcgtcccgaaacgccg
gaagaagcctttcagcttttggtggatctgcggctctggcatcctcacgagaatttgttt
ctgcggcgcagccagattccaatccagttccctagccgagtccttgaagtggcccaacgc
tgtcttattgacccgcccgccgactctagccgcgatcgcctagacctgactcacctcaag
gtctataccattgacgacgaaagcacgcgggaaatcgacgatggtctgagcgtcgagttt
ttgcccgacgggcagcaccgcatctgggttcacattgctgaccctagccgctggctcacg
cctggcgatgcgctcgatttggaagcgcggcggcgctgcattacgctgtatttgccgacg
ggcatgacccccatgtttccgccagagctggccaccgggccgatgagcttggtgcagggg
cagttgtgtcatgcctttagttttggggtgctggtggatgcagatggcgcaatccagtcc
tacgaaatgcacccgacgctcatcaagcccacctatcgcctgacctacgacgacgtagat
gagatgctgcaactgggcatccaggcggaaccggagctagagattttgtttcaaacggca
agtcagcgtcagcgctggcggatgcagcagggcgcgatcagcattcaaatgccagaatcg
tccatcaaagtgaccgaagacgacgaaattcggattgacgtgtttgaagaatccgcttct
cgaattctggtgtcagaaatgatgatcctggcgggcgaggtggctgggcgctatggcgag
gcgcatggcctgccgctgccgtttcgggggcaggaacagcccgaactcccgcccgaagag
gaattgatgctgttgccaccggggccagtgcggggctgtgcggttcgtcgctgcatgaag
cgcagtgaaatgggcgtgactccgatccgccacgcgggtctggggctggatgtctatgtg
caggtgacatcgccgattcgccgctacgccgacttgctggctcactttcagatcaaggcg
catttgcagggtgacccgctgcccttttcgccagaggaaatgacggaactgctgcaaggc
atcggctccacgacttacgaaatggtgcaggtcgagcgccagacaaatcgctactggagc
ctggaatacctgcggcgcaatgcaaacgaggtctggccggcgctggtgctgcgctggctg
cgggagcatgaaaactttgggctggtgctgctagaagatttgggactggagatggcgatg
cgctttagccgaaccgtggaagtgggcgatcgcctcgatgtgaaagtgtcctatgtcgat
ccgcgccgcgacctgatccagttcgtggaaatcgatcaggccgttccccaggccgcctct
tga
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