Tympanuchus pallidicinctus (lesser prairie-chicken): 128076242
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Entry
128076242 CDS
T08967
Symbol
THOC2
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03013
Nucleocytoplasmic transport
tpai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128076242 (THOC2)
09122 Translation
03013 Nucleocytoplasmic transport
128076242 (THOC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpai03019
]
128076242 (THOC2)
03041 Spliceosome [BR:
tpai03041
]
128076242 (THOC2)
Messenger RNA biogenesis [BR:
tpai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
128076242 (THOC2)
Spliceosome [BR:
tpai03041
]
Complex C
Other components
EJC/TREX
128076242 (THOC2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128076242 (THOC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
128076242
NCBI-ProteinID:
XP_052529647
LinkDB
All DBs
Position
Unknown
AA seq
1607 aa
AA seq
DB search
MAIVLPAEWIKNWEKGGRNEFLQLCRALSEDKSHDSLTFRDIQQALYELSSHVVRGNLKH
EQASGVLADIIEFREDMPSILADAFCILDIETSCLEEKTKRDCFTQLVLSCLYLVSDTVL
KERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDL
SGNITSDLILENIKSLIGCFNLDPNRVLDIILEVYECRPEYDDFFVPLIESYMYMCEPQT
LCHILGFKFKFYQDPSGETPSSLYRVAAVLLQHNLIDLEDLYVHLLPGDNAIIEEHKREI
VEAKQIVRKLTMVVLSSEKTEEKEKEKEKEEEKTEKPPDNQKLGLLEALLKIGDWQHAQS
IMDQMPPFYATSHKPIAIALCQLVHVTIEPLYRRVGVPKGAKGSPISPLPNKRAPKQADS
FEDLRKEVFNMLCYLGPHLSHDPILFAKVVRLGKAFMKEAGATKKFISDRMVKFQSDGSK
QEDKEKMEVLFSCVLSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQYRYRLYGQWKN
ETYNSHPLLVKVKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHANPTILFDYILSQIQK
YDNLITPVVDSLKYLTSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAV
FRKYPIELAGLLQYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQL
KAEGGYFGQIRNTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKL
YDQCHDTLVQFGGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHQISSK
YDELKKAEKGNKQQHKVHKYITACELVMAPVHEAVISLHPPKVWDDISPQFYATFWSLTM
YDLAVPHSSYDREVNKLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQLEHV
QRVLQRLKLEKDNWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCAHFVELVHQQKTP
NFSTLLCYDRVFSDIIYTVASCTENEASRYGRFLCCMLETVTRWHSDRVIYEKECGNYPG
FLTILRATGFDGGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTK
ILPWYPKVLNLGQALERRVHKICQEEKEKRPDLYALAMGYSGQLKSRKPFMIPENEFHHK
DPPARNAVAATVQNGPGGAGMPTSLTINTAKLEESAAEETDKLKEKSQGTVKVINKTVNA
TPKVTTSNGNSASNSKIIKEKDDKEKSGKEKDKEKKEKIPATTPEAKALGKDGKDKPKEE
RANKDEKPREIKEKTPKSDKEKEKAKKEEKASKEEKSKTIVTTIESKSVTEKEREKEPSR
EKDVAKDMKSKENTKGGEKIPVAGSLKSPVPRSETSECEREQKRRKVDIHSSPSHSSTVK
DNLNELKDSSTKHYINHTTPTLSKSKEREVDKKDLDKSRERSREREKKEEKDRKDRKRDH
SNSDREVPQDSTKRRKEENGTTGSSKHSKSESPSDSPRSNEKEREKSKSKSSGKEKGDSI
KAEKMEKSSSGSKKESRHDKEKEKKEKRDSTGGKEEKKHHKSSDKHR
NT seq
4824 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcgtgctccccgccgagtggataaagaactgggaaaaggggggcaggaacgag
tttttgcaactgtgtcgcgctctcagtgaagacaaaagccatgacagcctcactttcaga
gatatccagcaggctttgtatgagctttcatctcatgttgtgagaggaaacttaaagcat
gaacaagcttctggtgttcttgctgatattatagagtttcgtgaggacatgccttccatc
ttagctgatgcattctgcatattagatattgaaacaagttgcttagaagaaaaaactaaa
agggattgttttactcagctggtgttatcatgcttgtatcttgtatctgacactgtccta
aaggagcgtttagatccagaaacactggaatcattaggactgatcaagcagtctcaacag
ttcaaccagaaatctgttaaaataaagacaaaactattctacaagcaacagaaattcaat
ttattacgagaggagaatgaaggttatgcaaagctgattgcagaactggggcaagaccta
tctggcaacatcactagtgatttaatccttgaaaatatcaaatctttaataggatgtttt
aaccttgatcctaacagagttttggatattatcctagaagtctatgagtgcaggcctgag
tatgatgatttctttgtaccactgatagagtcttacatgtacatgtgtgaacctcaaact
ctatgccatatccttgggttcaaattcaaattttatcaggatcccagtggtgagacacct
tcctccctgtacagagttgctgctgtcctgttgcaacataatctcatagatttggaagat
ctttatgttcatcttcttccaggggataatgccatcattgaagaacacaagcgagagata
gtggaagctaagcagattgtgagaaagctcaccatggttgtcttatcctctgagaaaact
gaggaaaaggagaaggaaaaagaaaaagaggaggagaaaaccgagaagcctccagataat
cagaagcttggtttactggaagctctattaaaaattggtgattggcagcacgcacagagt
attatggatcagatgcctccattttatgctacttcacataagcccattgcgattgccctt
tgccagctcgtacacgtgacaattgaacctttgtaccgcagggttggtgtaccaaaaggg
gctaaagggtcaccaatttctcctctgccaaacaagagagcaccgaaacaagcagacagc
tttgaagacttgaggaaggaagtgttcaacatgctgtgctaccttggtcctcatctctcc
cacgatcccattttatttgcgaaagtggtgcgccttggaaaagcttttatgaaagaggcc
ggagctacgaagaaattcatcagtgacagaatggttaagtttcagtctgatggaagcaag
caagaagacaaggagaaaatggaggtactgttcagctgcgtattgagcattaccgatcag
gttctgcttccttctctttctctgatggactgcaatgcatgcatgtctgaagaactgtgg
ggaatgttcaaaacatttccataccagtaccggtaccgtctttatgggcagtggaagaat
gaaacatacaatagccatccactcctagtgaaagttaaggctcaaaccatagaccgagcc
aagtacatcatgaagcgtctgactaaggaaaatgtgaaaccatctggaagacagattggg
aaactcagccatgccaatcctaccattttatttgattatattttatcacagatacaaaaa
tacgacaacttaataaccccagttgttgattcgctgaaatacctcacttcactgaattac
gacgtcttggcgtattgtatcatcgaagctctggcaaaccccgagaaggagagaatgaag
catgacgacaccactatctcaagctggctgcagagcctggctagcttctgtggtgctgtt
ttcagaaaatacccgattgaacttgctggtctacttcaatacgtagccaaccaattgaaa
gctgggaaaagctttgatttgcttattttaaaagaggtagtacaaaaaatggcagggata
gaaattacagaagaaatgacaatggaacagttggaagccatgactggtggagaacaacta
aaagctgagggtggatactttggccaaattaggaatacaaagaagtcttctcagaggttg
aaggatgcattactggaccatgatcttgctcttccgctatgcctgcttatggctcaacag
agaaatggtgtgatctttcaagaaggaggggaaaaacatctgaagctggtgggaaaactg
tatgatcaatgccatgacaccctggtacagtttggtgggtttttagcatccaacctgagc
acagaggattacattaagcgagtgccttcaattgacgttctttgtaacgagtttcacacg
cctcatgatgctgcgtttttcctctcaaggcccatgtatgcacaccaaatttcatcgaag
tatgatgaacttaaaaaagctgaaaagggaaataaacagcaacacaaagttcacaaatac
attacagcatgtgaactggtgatggctccagttcatgaagctgtgatttctctacaccct
cccaaggtttgggatgacatcagtcctcagttttatgccacattctggtctctgactatg
tatgaccttgctgtcccacatagcagctatgacagagaagtcaataaacttaaagtccag
atgaaagccatagatgacaatcaggaaatgcctccaaataaaaagaaaaaagaaaaagaa
cgttgcactgctcttcaggacaagctccttgaagaggagaagaaacagttagagcatgtt
caaagagttttacagagactgaaattagagaaggacaactggcttctggcaaagtctacc
aaaaatgagactatcaccaagtttttgcagctatgtatatttcctcgctgcattttctcg
gcaatagatgctgtttattgtgctcactttgtagaactggttcatcagcagaaaacaccc
aacttctccacgcttctctgttatgatagagttttctctgatattatatatacagtagca
agttgtactgaaaatgaagctagtagatatggcaggtttttgtgctgcatgctggagact
gtgactagatggcacagtgacagagtcatatatgagaaggaatgtggcaactatccaggc
ttcctaactatattacgagcgactgggtttgatggtggaaataaagctgatcaattggat
tatgagaatttcagacacgtggtgcacaaatggcactataaattaactaaggcttctgta
cactgccttgaaactggtgaatatacacacatcagaaatatcctgattgtgctgaccaaa
atccttccatggtatccaaaagtgttgaacctgggccaagccttggaaagaagagtacat
aagatatgtcaggaagagaaagagaagagacctgatctatatgcattggctatgggctat
tctgggcagttgaaaagtaggaagccttttatgatacctgaaaatgaattccaccacaaa
gacccacctgccaggaatgctgtagctgcaacagtacaaaatgggccaggtggtgctggg
atgcctacatctctcacaataaatacagcgaaactggaggaaagcgctgctgaagagact
gataaactaaaggagaagtctcagggtactgtgaaagtcattaataaaactgtcaatgct
acaccgaaggtgacaacaagcaatggaaacagtgcttctaatagcaaaattattaaagag
aaagatgataaagaaaaaagcgggaaggaaaaagataaagagaagaaagaaaagattcca
gctaccactccagaggcgaaggcacttgggaaggatgggaaagataaaccaaaggaagaa
cgggcaaataaagatgagaaaccaagagagattaaggagaaaacaccgaaatctgacaaa
gagaaggagaaggccaagaaagaagaaaaagcttcgaaggaagaaaaatccaagacaatt
gttaccaccattgagtcaaaatcagttacagaaaaggagagagagaaggagccatccaga
gaaaaagatgtagcaaaggatatgaaatccaaggaaaatactaaaggaggagaaaagatt
ccagtagctgggtccttgaagtctcctgttccccgatcagaaacatcagaatgtgagagg
gaacaaaaacgccgcaaagttgatatccattcttctccatcacattcctcaacagtaaag
gacaacctcaacgaactcaaggactcttcaacaaagcactacattaaccacactactcca
acactgtccaagagtaaagagagagaagtggacaagaaagacttggacaagtcaagggaa
agatccagagagagagagaagaaagaggaaaaggacaggaaagatcgaaaaagggatcat
tccaacagtgaccgagaggtgccacaggattcaactaaacggcgcaaggaagaaaatggg
acaacaggttcttcaaagcacagtaaaagcgaaagtccttctgattctcctcgttccaat
gaaaaagagagggagaagagcaaatcaaaatcttcaggaaaagaaaaaggtgactcaatc
aaagcagaaaagatggagaagagctcctctggtagcaaaaaggaatcgagacatgacaaa
gaaaaagaaaagaaagaaaaacgagacagcactggagggaaagaagaaaagaaacatcat
aaatcttcagacaagcacagataa
DBGET
integrated database retrieval system
