Tympanuchus pallidicinctus (lesser prairie-chicken): 128081778
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Entry
128081778 CDS
T08967
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128081778 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpai03019
]
128081778 (CNOT1)
Messenger RNA biogenesis [BR:
tpai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128081778 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
128081778 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
128081778
NCBI-ProteinID:
XP_052541330
LinkDB
All DBs
Position
Unknown
AA seq
2377 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVTTDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLSQPTFQQSKMKPSDLSQVWPEANQNF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQQAWATDDVAQIYDKCMTEL
EQHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADAD
LLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSR
GNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQH
NPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHE
VRQGEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWL
ELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVL
LVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEIN
IAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALV
LYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNS
HTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWN
HEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7134 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaacaggcacggt
cccgaggcagacaggcacttattacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcctacgccattgacaatccgttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ctaagtaaagttcaagaggtgatatttggtctcgctttactgaactcattcagctcagat
ctacgaggttttgctgcccagtttatcaaacagaaactcccagatcttttacgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcatttggggtgggacag
gaacagatcgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaacaatgatggagagttctctggcagactttatgcaa
gaagttggctatggcttttgtacaagcgttgaagaatgtcgcaacataatcatgcagttt
ggagttcgggaggtgacggctgcccaggttgccagggtgctggggatgatggctcggact
cattcggggctgacggatggtattccattacaatctatttcggctcctggcagtgggatt
tggagtgatgggaaagataaaagtgatggagcacaagcccatacctggaatgtggaggtc
ttaattgatgttcttaaggagctgaatcctagcctggacttcaaagtagtaacctatgaa
ttggaccacccaggatttcagattcgtgacagcaaaggcctgcatattgtggtgtttggc
atccagagagggctgggcatggaagtttttccagttaatgccatatacagaccttggaag
catgcagaaggccagctctccttcattcaacattccctcataaacccggacatcttttgt
tttgctgactacccttgtcatacagttaccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgatcgaatctctgttacggctg
gcagaagtggggcagtatgagcaggttaagcagctcttcagttttcccatcaagcattgc
ccagatatgttggtgttggccttactgcagatcaacacttcctggcataccttgcgccat
gaactcatctccacactcatgccaatcttccttggcaaccatcccaactctgccatcatt
ttgcactatgcgtggcatgggcagggtcagtctccttcgattcgccagcttatcatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggccaaattgtcacgtatt
cttgatgtggcacaagacttgaaggccttgtcaatgctgctgaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgagaatacctcaaacttgacaaatgg
ctcacagacaaaattcgggagcatggggagcccttcatccaagcctgcatgaccttctta
aagagaagatgtccatccatcctaggcggcctggctcctgagaaagatcaacccaaaagt
gctcagcttcctccagaaaccttggcaactatgttggcatgcctgcaggcttgtgctggg
agtgtttctcaggagctgtcagagaccatcctcaccatggtggccaactgcagtaacgtc
atgaataaggccaggcagccaccgcctggagtcatgcccaaaggccgcccacccagcgcg
agcagcttggatgccatctctcctgtgcagatcgactcgcttgcaggaatggcatctctg
agtttaggtggctcagctgctcctcacacccagagcatgcaaggcttccctccaaacctg
ggctctgcgttcagtactcctcagtcaccagcaaaagcatttccccctctttccacacaa
aaccagacaacgggtttcagtggcattggaggactctcttcacagcttccagtaggaggt
cttactacgggtagcctgactggcataggaactggagccctgggccttcctgcagtgaac
aatgacccattcgtgcaaaggaagctgagcacatctggactgagccagcctacgttccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagaacttc
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatctacaaccatccacca
catccaaccatgtctgtggatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaaagagaagtgtttaactgcatgctgaggaacttgtttgaggaatatcgt
ttctttccccagtaccctgacaaagagctgcacataacagcctgcctgtttggtgggata
atagagaaaggactggttacctacatggctttgggcctggcccttcgctacgttcttgaa
gccttacgaaagccttttgcctccaaaatgtactattttggtattgctgcactagataga
tttaaaaataggttgaaggactatcctcagtattgtcagcacttggcttctattagtcac
tttatacagttccctcatcacttgcaggagtacatagaatatggacagcagtctagagat
cctcctgtgaaaatgcagggctcaatcaccacccctggaagcattgcacttgcccaggct
caggcccaggcccaggttccagcaaaagctcctcttgctggccaagtcagcactatagta
accacctcaaccaccaccactgttgcaaaaaccatcaccatcactcgaccaacaggagtc
agcttcaagaaggacgtgccgccttccattaataccaccaacattgatacgctgttagtt
gcaacagatcaaactgagagaattgtggaacctccagaaaacgtccaggaaaaaattgct
ttcatcttcaataatctgtcccagtcaaacatgacacagaaggttgaagaactgaaggaa
acagtgaaagaagagttcatgccttgggtatcgcagtatctcgtgatgaagcgagtcagt
attgagccaaattttcacagcttatattcaaacttccttgacactcttaagaatcccgag
tttaataaaatggttctgaatgaaacttacagaaatatcaaggtgctgctgacatcagat
aaggctgcagccaacttctccgaccgttccttgttaaagaaccttggtcactggctggga
atgattacactggctaaaaataagcccatcctgcacacggatttggatgtgaagtctcta
ctactggaagcgtatgttaagggacagcaggaattgctttatgtagtaccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggtcttcaggcctccaaacccatggacaatg
gccattatgaatgttttagctgagctgcatcaagaacatgatctaaaattgaatctcaag
tttgagatcgaagtgctctgcaagaatcttgcactggacatcaatgagctgaaacctgga
agtctcctgaaagacaaggatcgtctgaaaaatctggatgagcagctgtctgctccaaag
aaagatgtgaagcagccagaagagctaccacccatcacgaccaccactgcttctacaact
ccagctaccagcaccacttgtacagccacggttcctccgcagccccagtacagttatcat
gacatcaatgtctattcgttaggagggttggctccacatatcaccttgaatccaacaatc
ccgctgttccaggcccacccccagctgaagcagtgcgtgcggcaggctatagagcgagcg
gtgcaggagctggtccaccccgtggtggatcggtccattaagattgccatgactacgtgt
gagcagatagtcaggaaggacttcgcgctggattctgaggagtcgcgaatgcgtgtggct
gcacaccacatgatgaggaacctgactgctgggatggccatgatcacctgcagggagcct
ttgctcatgagcatagctaccaacctgaagaacagttttgctactgcactgagggcagcc
tccccacaacagagggacatgatggagcaagcagctgcccaactggcacaggataactgt
gagctggcatgctgctttatccagaagacagctgtggaaaaagcaggccctgaaatggac
aagaggctggcaactgagtttgagctcagaaaacacgctagacaggagggtcgtcggtac
tgtgatcctgttgtgttaacttaccaagctgaacggatgccagaacagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttatgaagagtttgcacgtaacgtcccc
ggcttcttgcctaccaatgacttaactcagcctacaggattcttggctcaacctatgaag
cagcaagcttgggccaccgatgatgtagcacaaatctatgacaaatgcatgacagaactg
gagcagcacctgcagtccattccccatactctggccatgaatcctcaagctcaagcgttg
cgcagcctcctggaggctgtggtggttgctcggaactcccgtgatgccatcgctgcgctc
ggactgctgcagaaggctgtagagggcttactggatgccaccagtggggcagatgctgac
ctcctgcttcgctaccgtgagtgtcacctgctggtgctgaaggctctgcaggacggccgt
gcgtatggatctccgtggtgtaacaagcagattacgaggtgcctgattgaatgtagagat
gagtacaagtacaacgtggaagctgtggagctgctgatccgcaatcacctggttaacatg
cagcagtatgatcttcacctggctcagtcgatggagaacggcttgaactacatggctgtg
gcatttgccatgcagttggtaaagatcctccttgtggatgagagaagtgttgcccatgta
acggaggcagatctgttccacaccattgagacgctcatgaggatcaacgctcattccaga
gggaatgccccagaagggttaccccagctgatggaagtggtccgatccaactacgaagcc
atgattgaccgtgctcacggaggtcccaatttcatgatgcattctggaatttcccaagcc
tcagaatatgatgatccaccaggtctgagggagaaggcagaatacctgctgagggagtgg
gtgaacctctaccattcggctgcagcgggccgcgacagcaccaaagcgttctctgcgttt
gttggacagatgcaccagcaaggcatcctgaaaacagacgacctgatcacccgctttttc
cggctttgcactgaaatgtgtgttgaaatcagctatcgtgctcaggctgagcagcagcac
aaccctgctgccaaccccaccatgatccgagccaagtgctaccacaatctggatgccttt
gtgcggctcattgcactgctggtgaagcactccggggaagcgaccaacaccgtgacgaag
atcaacctcctgaacaaggttcttggtattgtggtgggagttcttctgcaagaccatgag
gttcggcagggtgagtttcagcagctcccttaccatcgcattttcatcatgttgctgttg
gaattaaatgctcctgagcacgtgttggagaccatcaacttccagacgctcacagcattc
tgtaacacatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctg
gaactgatctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaag
ggttggcctatgtatgcccagttactgatcgatcttttcaagtacctggctccttttctc
agaaacgtggaactcaccaaacctatgcaaattctgtacaagggcactctgcgtgtgttg
ctggtcttgttgcatgatttcccagaatttctttgtgactaccattatgggttctgcgat
gtcatcccacctaactgtattcagctaaggaatttgatcctgagtgccttcccacggaac
atgaggcttccagaccctttcacccccaatctaaaggtggacatgttgagtgaaattaac
atcgccccacgaatcctcaccaatttcactggcgtgatgccacctcagttcaagaaagac
ttggattcctatctcaaaacccgttctccagtcacttttttgtctgacttgcgcagcaac
ttacaagtatcaaatgaacctggcaaccgctacaacatccagctgattaatgccctggtg
ctctacgtgggcactcaggccattgcgcacatccacaacaaaggcagcacgccctccatg
agcaccattacccactcagcacacatggacatcttccagaatttggcagtggacctggac
accgaaggtcggtacctcttcctgaatgcaattgccaatcagctgcgataccccaacagt
catacccactacttcagctgcaccatgctttacctgtttgcagaggccaacactgaagct
atccaggagcagatcaccagggttctcttggaacgactgattgtaaataggcctcatccc
tggggtctcctcatcactttcatcgagctgataaaaaacccagcatttaagttctggaac
catgaatttgttcactgcgctccagaaattgagaagttgttccagtcggttgcacagtgc
tgcatggggcagaagcaagcccagcaagtaatggaggggactggtgccagttag
DBGET
integrated database retrieval system
