Tympanuchus pallidicinctus (lesser prairie-chicken): 128082420
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Entry
128082420 CDS
T08967
Symbol
CNGB1
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
128082420 (CNGB1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tpai04040
]
128082420 (CNGB1)
Ion channels [BR:
tpai04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
128082420 (CNGB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
128082420
NCBI-ProteinID:
XP_052542484
LinkDB
All DBs
Position
Unknown
AA seq
1188 aa
AA seq
DB search
MLGWIERVVPQPPAQNLPEESPAAPQPAKVPAGKDSTGDAVDRTQAVIKETEKKVEFTVA
EDSAPASASVFESVGSSVLSWISQGLEKVVPQPAPAPGSLQALGKSFETSVDVPDQTEVQ
VLKDEDEDALEITPFDPEEDELDVCELEDGLGTGTESWAGARVLSWLVQGFERMVPQPEV
PKRPEPELKKEQSSATAGGAKGTKTRVKPKDNIPGVVEPAVAEGQPEPGNTTLLPRSLAG
DSSSMFGWFVQGLEKVMPQPVPREKQDVQGAATTAFSPVEEIHIVPVEPQEMDLALEELD
DGWSAEGMHETTGWDDMAELGTQGCPLPPIEEELQEEETRLWPCAPSAAEEQEEVGEEEE
KKEEEDEEEEEEVEESAGALLHSLCPSTDEGPEDTFYAEEALSFARQEEAEISDLEGAFI
QVQEQAVQEETAGADTAGLRCCPAVGIEDVDGGGDPVEDDGTRLPLPTPGSPHMLVVPGA
SPRRKVPASADGLGEGNWDEEQQDSLPERIGSATSQSSTVIHDRLQELVRLFKERTEKVK
EKLTDPDVTSDEESPTASPSKPAPTAPPPPPGDAQVGEKPAEDEHYCEMLCCTFKCQPWM
DRLKSYQFPSSIDPLTNLVYVLWLFFVVLAWNWNCWLIPVRWAFPYQTPTNIHYWLLMDY
LCDLIYLLDIVVFQTRLQFVRGGDIISDKKAMKENYLRSQRFKMDVVCLLPLDFFYFKVG
VNPLLRFPRCLKYLAFFEFNNRLEAILSKAYIYRVIRTTAYLLYSLHVNSCLYYWASAYE
GLGSTTWVYDGEGNSYIRCYYWAVKTLITIGGLPDPKTLFEIVFQLLNYFTGVFAFSVMI
GQMRDVVGAATAGQTYYRSCMDSTIKYMNFYKIPRTVQNRVKTWYEYTWHSQGMLDESEL
LVQLPDKMRLDIAIDVNYSIVSKVALFQGCDRQMIFDMLKRLRSVVYLPNDFVCKKGEIG
REMYIIQAGQVQVLGGPDGKTVLVTLKAGSVFGEISLLAAGGGNRRTANVVAHGFANLFI
LDKKDLNEILVHYPESQKLLRKKARKMLKNNNKPKDEKGGPGDPLIIPPKADTPKLFQAA
LAAVGKTGGRGHLAQLRWKLRQLKAMQEAQDPSFSPIPPKSPVHRRSPTASPKARPPPGE
EISSKSADNLVAIRVIPTAQEDEEILAAEISEKEDEKEEEKEDKKEEK
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgctgggctggatcgagcgggtggtcccacagcccccagcacagaacctgcctgaggag
agccctgcagccccacagcctgccaaggtgccagcagggaaggacagcacaggggatgct
gtggaccgcacacaggctgttatcaaagaaacagagaagaaggtggaattcacagtcgcc
gaggactcggcccctgcatcagcatcagtgtttgagagcgtggggagcagtgtgctgtcc
tggatctctcaggggctggagaaggtggtcccacagccagcaccggccccagggtcactg
caagcgcttgggaagagcttcgagaccagtgttgatgtccccgaccagacagaggtgcag
gtcctcaaggatgaggatgaggatgctctggagataacaccctttgaccctgaggaggat
gagctggatgtctgtgagctggaggatggcttgggcacgggcacggagagctgggcagga
gcacgtgtgctgagctggctggtgcagggctttgagaggatggtgccgcagccagaggtg
ccaaaaaggcccgagccggagctgaagaaggagcagagcagtgccacagcaggaggcgca
aaagggactaaaactcgggtgaagcccaaagacaacatcccaggagtggtggagccggcg
gtggcagaagggcagccagagccagggaacaccaccctcctccctcggtccctggctggg
gacagcagcagcatgttcggctggttcgtccaggggctggagaaggtgatgccgcagccc
gtgcccagggagaagcaggatgtgcagggagcagccaccacagccttcagccctgtggag
gaaattcatattgtccctgtggagccccaagagatggaccttgctctggaggagcttgat
gatggctggagtgctgaaggcatgcatgaaacaacgggctgggatgacatggctgagctg
gggacacagggctgtccccttccccccatcgaggaggagctgcaagaggaggagaccagg
ctgtggccctgcgccccgagtgcagctgaagagcaggaggaggtgggagaagaggaggag
aagaaggaggaagaggacgaggaggaggaggaggaggtggaggagagcgcaggggccctg
ctccattccctgtgcccatccacagatgaggggccagaggacaccttctatgcagaagag
gccctcagctttgcacgacaggaagaagctgagataagcgatctggaaggcgctttcata
caggtgcaagagcaggcggtgcaggaagaaactgcaggagcagacactgcagggctgagg
tgctgccccgctgtgggcatcgaggacgtggatggtggaggtgaccccgtggaggacgat
ggcacccgcttgccactgcccacccccggctccccacacatgctggtggtgcctggagcc
tctcccaggaggaaggtgccagcctctgcagatggcctgggagaagggaattgggacgag
gagcagcaggacagcctgcctgaacgcatcggctctgccaccagccagagcagcactgtc
atccatgaccgcctgcaggagctggtgaggctcttcaaggagcgaacagagaaggtgaag
gagaagctgactgaccccgatgtcacctctgatgaggagagccctactgcatcaccctcc
aagccagcacccacagcaccacccccacccccgggggatgcacaggtgggggaaaagcca
gcggaggatgagcactactgtgagatgctgtgctgcaccttcaagtgccagccctggatg
gaccgcctgaaaagctaccagttccccagcagcatcgacccactcaccaacctggtgtac
gtgctatggctgttctttgttgtcctggcctggaactggaactgctggctgatccccgtc
cgctgggccttcccctaccagacgccgaccaacatccactactggctgctcatggactac
ctgtgtgacctcatctacctgctggacatcgttgtctttcagactcgcctgcagtttgtc
cgaggaggagacatcataagtgacaaaaaggccatgaaagagaactacttgcgatcgcaa
cgctttaagatggatgtggtgtgcctccttcccttggatttcttctacttcaaagtcggt
gtcaaccctctcctgcgttttccccgctgcctgaagtacctggccttctttgagttcaac
aaccgcctggaggccattctgagcaaggcgtacatctacagagtgattcggaccactgcc
tacttgctgtacagtttgcacgtgaactcctgcctctactactgggcatcagcctacgaa
ggactgggctccaccacctgggtctacgatggggaaggaaacagctacatccgctgctat
tattgggcagtcaaaaccctcatcaccattgggggcctgccagatcccaagacactgttt
gagattgtcttccagctgctcaactacttcacgggcgtctttgctttctctgttatgatt
gggcagatgagggatgtggtgggtgctgccactgctgggcagacgtactaccggagctgc
atggacagcaccatcaagtacatgaacttctacaaaatccccaggacagtccagaaccga
gtcaaaacgtggtacgagtacacgtggcattcacaaggcatgctagatgagtctgagctg
ctggtgcagctgccggacaagatgcgattggacatcgccatcgatgtgaactacagcatc
gtcagcaaagtggccctcttccagggctgtgacagacagatgatcttcgacatgctgaag
aggctccgctcggtggtctacctgcccaatgactttgtctgcaagaagggggaaatcggc
cgtgagatgtacatcatccaggcaggacaagtgcaggtgctggggggacctgatggcaaa
actgtgctggtgacactgaaagccggatcagtgtttggagaaataagcttgctggcagct
ggaggagggaatcgccgaactgctaacgtcgtggctcatggatttgccaatcttttcatt
ttggacaagaaggatttgaatgagattctggtgcactaccctgagtctcagaagctgctg
cgtaaaaaggccaggaaaatgctgaaaaacaataataaacccaaagatgagaaaggaggg
cctggagacccgctgatcattccccccaaagccgacacccccaagctcttccaggctgct
ctggctgctgtagggaagacaggaggcagagggcacctggcacagctgcgctggaagctg
aggcagctgaaggcgatgcaggaggcacaggatcccagtttcagtccaataccaccaaag
tcaccggtgcaccggaggtcacccactgcctctcccaaagcaaggccccctccaggagaa
gagatatcctcaaaatctgctgataatttagtcgctatccgtgtgattcctacagcccaa
gaggatgaggagatacttgctgctgagatctcggagaaagaagatgagaaagaagaagag
aaagaagacaagaaagaagagaaatga
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