Tympanuchus pallidicinctus (lesser prairie-chicken): 128089360
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Entry
128089360 CDS
T08967
Symbol
SKIC3
Name
(RefSeq) SKI3 subunit of superkiller complex protein
KO
K12600
superkiller protein 3
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128089360 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpai03019
]
128089360 (SKIC3)
Messenger RNA biogenesis [BR:
tpai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
128089360 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_19
TPR_2
TPR_14
TPR_8
TPR_11
TPR_16
TPR_12
TPR_CcmH_CycH
TPR_17
TPR_9
ANAPC3
TPR_15
ARM_TT21_C
DUF3856
Fis1_TPR_C
ARID
TPR-S
TPR_10
TolB_N
DUF7674
Retrotran_gag_2
BTAD
TPR_5
TPR_30
Motif
Other DBs
NCBI-GeneID:
128089360
NCBI-ProteinID:
XP_052556635
LinkDB
All DBs
Position
Unknown
AA seq
1562 aa
AA seq
DB search
MSNKEVKAALKSAREAIRNKEYKEALKHCKVVLKQEKNNYNAWVFIGLAAAELEQPDQAK
GAYKKAIELEPNQLLAWQGLANLYEKSNQTDVYTDLQDVYQKLLELYESGDKQKWCDVCN
KLMELYRQGNKYLEAAEICQKLIEVKKEGGAEKVELHQLWKRMIQLLGDNVQYQDNKTAQ
LLLSAYEEALNSADTVPSEDHRNLYKDFIQCLSKFPHEATKLEKACDDMMALYPTLSYPL
EVLCLYFIQSGTLSEEALQYFSKLLEMDSSSGPGIIGFGIKCLQEKKYKEAIKSLTEGLQ
KVSQCAGAWHYLAEAQMKVHKYRDAVLSCNQAIKNLQTPDGATLQRKNLILQLKAEVLIK
ISDAGAAEEAINALEEVVGASSDPVLLAFRGRAYLNKGLVDEASKISQELLLSHPDVAEA
HALEGFIHYSQKKYEQAERSFQNAIERRAEIAEYHQYLGLTYWFMSDETKKDKGKALTHF
LKAAKLDSYLGSVFCYLGNYYRDVAGDKSRARGCYKKAFELDGTDEESGTAAVDLSVELG
DTETALSILNEVTEKANAGAAKWAWLHRGLYYLRTGQPSKAVADLQAALRADRMDPNCWE
SLGEAYVSRGSYAAALKSFRKASELNPDHVYSIYRAAAVEQILGKYENAIATYQQILEKT
EEYVPALKGLGECYLMLARSALEKYLDMRAVGYIEQALEFFTRATKNRPDISSLWKLLGD
TCTSVHVISPAKVNVRVLGSLLGKSEGKQMLKKTELLRLGGRCYGRALKLIPLPNIWCDL
GINYYRQAEHLTAVGTDLNEISELLEKSLQCLKKAVRLDNKNHLYWNALGVVASCSAIGN
YALAQHSFIKSVQAEEINVVAWTNLGVLYLATGNIEQAHEAFKVAQSLEPSYLMCWIGQA
LVAEAVGSFDAMDLFRHTTELAMHTEGAKGYAHWVCSTLQDKSNRDTEQYQYNIVEMNAI
PAAQVVMSKYTERNPDDASAFTMLGYLNDYLELKRQAKDAYERAATLLKNSEDTEKYNTA
MQNYGRSLCAIGECDKAIEVYTSIPLTEFDAIVGIALAYFKKGLLKESIQAYEKALSVAE
SEQDKTHILTALAIIEYKRNKVDAAKTLLFKCSLKEPSTESLKALCTLGLVKQDVTLATA
ALKELLKHEKGSDGIYERCLIASAVYALQGRNLGIQREVSKAIHSYPGNPALWSLLSRLV
PLYTPQKAKGGAVAGNIAHALDLRHGKDVLLNVAVNQLAAGCHMLEDERNNPLKNIQKAI
LICPDNPSAWTVLMAACHAENTVGCLNNTQPKRTDLEMTLVSTISAKTGENDLPHNYIQT
LEDWSLCQAITSLEENGRISEAEALCTKGLKNCPEHPALFLLLRQIQCKQLLQSHKELPD
TILKELHKTVMTSSSSIGAWQWLAKVYQSQGMMVGAEMCYRRSLQLASQQGSWSGKLSSL
LRLAMLALEICMANVSNEHWPSLVQEATTEALKLSSCPLAVLLQALLQYIRKMGARETRR
MLERVVYQPGNPETIVSVARWYLMQHLYAKDDYELIDVLVENAKANGDIRALDLHKKLSA
SA
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaggaggtgaaggcagcattaaagagcgctagagaagccataagaaataag
gaatataaagaagccttaaagcactgcaaggtagtcttgaagcaagaaaaaaataactac
aatgcttgggtatttattggcctggcagctgctgagttggagcaacctgatcaggccaaa
ggagcgtataagaaggctattgaactagaaccaaaccagttactggcgtggcagggctta
gcaaatttatatgagaaatccaaccaaacggatgtctacacagacttacaagatgtgtac
caaaaactcttggaactctatgaaagtggagacaagcagaaatggtgtgatgtatgtaac
aagctcatggaactatatcgccaaggaaataaatacttagaggcagcagaaatatgccag
aaactcatagaagtgaaaaaggaaggaggtgcagaaaaggtggaactccatcagctttgg
aagaggatgatccagttactgggagacaatgtgcagtaccaggataataagactgcacaa
ttgcttttgagtgcatatgaagaggcactgaactctgctgacactgttcccagtgaagat
catcgaaatctttacaaagactttattcagtgcttgtcaaaatttcctcatgaagcaact
aaattggaaaaagcttgtgatgatatgatggctttatatccgactttgagttatccttta
gaagtactttgcttgtacttcattcagtcaggtactttgtcagaagaggccttgcagtat
ttttctaagcttctggagatggactcaagtagtggtccaggcatcattggttttggtata
aaatgcctccaagaaaagaaatacaaagaggctattaagagtcttactgaaggtttgcag
aaggttagccagtgtgcaggagcatggcattacttggcagaggcgcagatgaaagttcac
aaatacagggatgctgtcctgtcctgcaatcaagcaattaagaatcttcaaactcctgat
ggtgctactctgcagcggaagaaccttatccttcagttgaaagcagaggttttgatcaaa
atatctgatgctggagctgcagaagaagccattaatgcactcgaggaggttgtgggagca
agcagtgatcctgtgcttttagctttcagaggtcgagcatatttaaacaaaggtttagtt
gatgaagcttcaaagatttcacaagagcttctgttgtcacatcctgatgtagctgaagcc
catgctcttgagggtttcatccattattctcagaagaaatatgagcaggcagaaagaagt
tttcaaaatgctattgaaagaagggctgaaattgctgagtatcatcagtatctggggctc
acttattggttcatgagtgatgagacaaaaaaagataaaggaaaagcactcactcatttc
ttgaaggctgcaaagttggacagctacttgggaagtgtcttttgttatttaggtaactac
tacagagatgttgctggagacaaaagtagagctcgtggttgctataaaaaggcttttgaa
ctggatggaactgatgaagaatctggaacagcagctgtagacttaagtgtggagcttgga
gacacggagactgctctatccatcttgaatgaagtaactgaaaaagcaaatgctggtgca
gcaaaatgggcttggcttcatcgtggactttactacctcagaactggtcagccgtcaaaa
gcagtggctgatttgcaggcagctctcagggctgaccgaatggatcccaactgctgggag
tctctaggggaggcttatgtgagcagaggtagctatgcagcagctctaaaatccttcagg
aaggccagtgagctgaacccagaccatgtgtacagcatttacagagctgcagcagttgag
cagattctaggcaaatatgaaaatgctatagctacctatcagcagatcttagagaagaca
gaagagtatgtacctgcacttaaaggacttggagaatgctatctcatgctggcaagatca
gcccttgagaagtaccttgatatgagggctgtgggttacatagagcaggctcttgaattt
tttacaagggcaacaaagaaccgacctgatatatcttccctttggaaactgcttggcgat
acctgtactagtgtgcatgttatttcaccagccaaagtgaatgttcgagttctaggatcg
cttctgggtaaaagtgaaggcaaacagatgctgaagaaaactgagctgctgagactgggt
ggaaggtgttatggcagagctttaaaattgattcctttgcctaacatatggtgtgatctt
ggaataaattattatcgacaagctgagcacctcacagcagtaggcacagacctaaatgag
atcagtgaactactagagaagtctttacagtgtctcaaaaaagctgtgaggcttgacaac
aaaaatcacctttattggaatgcacttggtgtggttgcttcctgtagtgctattgggaat
tatgctcttgctcaacattcgttcatcaaatctgttcaagctgaggaaattaatgttgtt
gcctggacgaacctgggagttttgtatctagcaactggaaacattgagcaagctcatgaa
gccttcaaagtagcccagtctctggaaccttcttaccttatgtgttggattgggcaggct
cttgttgcagaggcagtaggcagctttgatgctatggatctcttcaggcacacaactgaa
cttgctatgcatactgagggagcaaaaggctatgcccactgggtatgttcaacactgcaa
gataaaagcaacagagatactgagcagtatcagtacaacattgttgaaatgaatgctatt
ccagcagcccaagtggttatgagcaagtatacagaaagaaatccagatgatgcatctgct
ttcacaatgcttggttacttgaatgactatctggaactaaaaagacaggcaaaagatgct
tatgaaagggctgctacattactaaaaaactctgaggatactgagaaatataacacagca
atgcaaaactacggcagatctctgtgtgccattggtgagtgtgataaagccattgaggtt
tatacatcaataccgcttactgagtttgatgccattgtggggatagcactagcctacttc
aagaaaggactcttaaaagaaagtattcaagcctatgagaaagccttgtctgttgcggaa
tctgaacaagataaaacacatatcctgactgccttggcaataatagagtataagcgaaac
aaagtggatgctgcaaagacactgctgtttaaatgctcattaaaggaacctagtacagaa
agtctgaaggctttgtgcacactaggactggtaaagcaggatgttacacttgcaacagca
gccctgaaggagttactgaaacatgagaaagggagtgatgggatttatgaaaggtgcctt
attgcatctgctgtttacgcactacaaggcagaaacttggggatccagagagaagtctcc
aaagcaatacacagttaccctggtaatcctgccctttggtctcttctgtctcgactagtt
ccattgtatacaccacagaaggcaaaagggggagctgtggcaggaaacattgcacatgca
cttgatttaagacatggaaaggatgtcctactgaatgttgcagttaatcaattggcagca
ggatgtcacatgttagaagatgagagaaacaatcctctaaaaaatattcagaaggcaata
ctcatctgtcccgataatccttctgcctggacagtgctaatggcagcctgtcatgctgaa
aacactgttggctgtcttaacaacactcaaccaaagcgaacagatctagagatgacactt
gtatctacaatttcagccaaaactggagaaaatgaccttcctcataattacatccaaact
cttgaagactggtctctttgtcaagctatcaccagtctagaggagaatggtagaatctca
gaagctgaagcactttgtaccaagggtttaaagaactgccccgagcacccagctctgttt
ttgcttctgaggcaaattcaatgtaagcaactgttacagtctcacaaagagcttccagat
accatcctgaaggagcttcacaaaacagtcatgaccagttcatcttccattggagcctgg
caatggttggcaaaagtgtatcagtctcaaggaatgatggttggagcagagatgtgttac
agaaggagcttgcagttggcatcacagcagggcagctggagtgggaagttatccagtctg
ctcagactggctatgcttgcactggaaatctgcatggctaatgtctcaaatgagcactgg
ccatccttggttcaggaggcaacaactgaagctttgaaactctcttcctgtcccttggca
gttctcctgcaagcgcttctacagtatattcgcaaaatgggagcaagagagactcgtcga
atgttggagagagtggtttaccaaccagggaatccagaaaccattgtgtctgtggctcgt
tggtacctcatgcaacacctatatgccaaagatgattacgaattaatagatgtacttgta
gaaaacgccaaagctaatggggatattagagctctggatctacacaagaaattatcagca
agtgcctag
DBGET
integrated database retrieval system
