KEGG   Thrips palmi (melon thrips): 117646493
Entry
117646493         CDS       T08251                                 
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
tpal  Thrips palmi (melon thrips)
Pathway
tpal03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tpal00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117646493
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tpal03041]
    117646493
   03036 Chromosome and associated proteins [BR:tpal03036]
    117646493
Spliceosome [BR:tpal03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    117646493
 Complex B
    117646493
 Complex C
   U2 SnRNP specific factors
    117646493
Chromosome and associated proteins [BR:tpal03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    117646493
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N TPR_DNAAF5 HEAT_MROH2B_C HEAT_ECM29 HEAT_2 Htt_N-HEAT_1 TPR_IPO5 XMAP215_CLASP_TOG VPS15-like_hel mTOR_dom UME
Other DBs
NCBI-GeneID: 117646493
NCBI-ProteinID: XP_034243381
UniProt: A0A6P8Z199
LinkDB
Position
Unknown
AA seq 1333 aa
MAADIPRTHEAIEAQILDIQSRKKQIVSEDGLTEKDRVGLGETGYFDSDIYDGGGGKYEG
YVTSIAANDEVDDDEVDQVSFTQNKRPGYTAPAALLNDVAQADKDYDPFADRRRPTIAEK
EDEYRQKRRRMIISPERVDPFAEGGKTPDVGSRTYTEIMKEQLLRGEETELRKKILEKQK
EGTLKVVSSNGDSAKAPPKRRGRWDQTEDAGTPSEKKKKADTSAWDKEDSTPAISRWDET
PGHPKGSETPGGMATPGVSTRMWEPTPGHATPGAVTPGRETPGHDKAMSSRRNRWDETPK
TERETPGHSSGWAETPRTDRAGADLIQDTPGTASKRRSRWDETPSNQMTPSAMTPSAMTP
HTPGTPSTPMGTPGATPSMMTPSGVTPTGQKAMAMATPTPGHLVTMTPEQMQNYRWEREI
DERNRPLSDEELESMFPVGYKILQPPAGYIPIRTPARRLTATPTPIAGTPQGFFIQTEDK
SAKYMDNQPKGNLPFMKPEDAQYFDKLLVDVDEETLSPDEQKERKIMKLLLKIKNGTPPM
RKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYV
HKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNTTARA
FAVVASALGIPSLLPFLKAVCRSKKSWQARHTGIKIVQQIAILMGCAILPHLKSLVEIIE
HGLVDEQQKVRTITALAIAALAEAATPYGIESFDSVLKPLWKGIRTHRGKGLAAFLKAIG
YLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEPQYIKDEIL
PHFFKHFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMET
IEKVMGNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQ
ICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLG
SILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVS
AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVC
TTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTP
LLEDALMDRDLVHRQTACAAIKHMALGVYGFGCEDALIHLLNHVWPNIFETSPHLVQAFM
DSIEGMRVALGPIKILQYTLQGLFHPARKVRDVYWKIYNSLYIGGQDALVGGYPRVENDP
KNIYARYELDYVL
NT seq 4002 nt   +upstreamnt  +downstreamnt
atggcggccgacatacctcggactcacgaagctattgaagcccaaattttagacattcaa
tcccggaagaagcagatagtttcagaagatgggctcacagagaaggatcgtgttggtctc
ggagaaactggctactttgacagtgatatctatgatggcggtggtggcaaatatgaagga
tatgttacatctattgcagccaatgatgaagttgatgatgatgaagttgatcaagtttca
tttacccaaaacaaaagaccagggtacactgcaccagcagccttactcaacgatgttgca
caggctgataaagattacgacccatttgcggacaggcgtagaccaacgattgcagaaaag
gaagatgaatacaggcagaaacggagaaggatgattatatctcctgagagagtggatcca
tttgctgaaggtgggaagactccagatgttggctccagaacctacactgagatcatgaaa
gagcagcttcttcgaggtgaagaaactgagctgaggaagaaaattttagaaaagcaaaaa
gaaggtaccttgaaggtagtcagcagcaatggagattctgctaaagctcctcccaaaagg
cgaggccgctgggatcaaactgaagatgcaggaactccttcagagaagaagaaaaaagcc
gacacctcagcttgggataaggaagattctacaccagccatttctcgctgggatgaaact
ccaggacatcctaaaggctctgagaccccaggaggaatggcaacacctggagttagcacg
cgcatgtgggagccgactccaggccatgcaaccccaggagcagtaactccaggcagggag
accccaggacacgataaggcaatgtccagccggagaaaccggtgggatgaaacccctaag
acagagcgagagactccggggcacagcagtggctgggctgagactcctcgcacagacaga
gctggagctgatctcatccaggacacacctggcacagctagcaagaggagaagtcgttgg
gatgagacaccttctaatcagatgacgccttcagcaatgactccctctgccatgactcct
cacacaccaggcaccccatcaacacctatgggaactcctggtgcaacaccgtcaatgatg
actcccagtggtgtcacacccactggccaaaaagccatggctatggccactcccacacca
ggacacctcgttactatgacaccagagcagatgcaaaactacagatgggaacgcgaaatc
gatgaacgaaatcgtccattgtctgatgaagaattagaatcaatgttccctgttgggtat
aaaatacttcaaccaccagctggatacattccaattagaactccagcccgtcgtctgaca
gctacaccaacgcccatcgccggcactcctcaaggcttcttcatccaaactgaagataag
agtgccaaatatatggacaatcagccgaaaggcaacctgccctttatgaagcctgaagat
gctcagtactttgacaaactcttggttgatgttgatgaggagacgctcagccctgatgaa
cagaaagaaagaaaaattatgaagctgctgctgaagattaaaaatggtacccctcctatg
aggaaagctgctcttcgtcagattactgacaaagctagggagtttggggctggccccttg
ttcaatcaaatcctcccgcttttaatgtcgcccactttggaagatcaagagcgtcacttg
ctggtgaaagtcattgaccgtattttgtacaaattagacgacttggtgcgtccttatgtg
cataagattcttgttgttattgaacctcttctgattgatgaggattactatgctcgtgtg
gaaggcagagaaattatttccaatcttgccaaagcagctggcttggctactatgatttca
accatgcgacctgacattgataacatcgatgaatatgtgcgcaacactactgctcgagca
tttgctgttgttgcctctgctttgggtattccgtctctccttcctttcctgaaggctgtt
tgtaggagtaagaagtcttggcaagcaaggcatactggtatcaaaattgtccagcaaatt
gctatcttgatgggctgtgccatcctacctcatcttaaaagtttagttgaaattattgaa
catggtcttgttgatgagcagcagaaggtgcgaactattactgctcttgctattgctgct
ttagctgaagccgcaactccatatggtattgaaagttttgattcggttctgaaacctctt
tggaagggtatccgtactcacagaggaaagggtcttgctgctttcttaaaggctattggg
tacctgattccactcatggatgctgagtatgctaattactacactagggaagtgatgctt
attctaattcgtgagttccaatctccagatgaagaaatgaagaaaattgtattaaaggtt
gtcaagcaatgttgtggcactgatggtgtggagcctcaatacatcaaagatgaaattttg
cctcacttcttcaagcatttctggaaccaccgaatggcattggataggagaaattacaga
cagcttgttgatactactgttgaaattgccaacaaagttggagcatctgaaatcatcaac
agagttgtggatgatcttaaagatgaaaatgaacagtaccgtaaaatggttatggaaact
attgagaaagtcatgggcaacctgggtgctgcagacattgactctcgtcttgaagagcag
ctcattgacggtatcctttatgcctttcaagaacagaccacagaagatgtggttatgttg
aatggttttggcactattgtcaaccaactgggcaaacgagtgaaaccctacctgcctcag
atttgtggtacaattttgtggcgattgaacaataaatctgccaaagtgcgacaacaagct
gctgatctcatttcaaggatagctgttgtaatgaaaacctgccaagaggaaaaacttatg
ggtcacttgggtgttgtgttgtatgaataccttggtgaagaataccctgaagtacttgga
agcattcttggtgctttgaaagctattgtcaatgttattggtatgacaaaaatgactcct
ccaatcaaagatttgttgcccaggctaactcccattctgaagaacaggcatgaaaaggtg
caagaaaactgtattgacctggtaggacgtattgctgatcgtggacctgaatatgtatca
gctcgagaatggatgcgtatttgttttgaactcctcgagctcctaaaggctcacaaaaaa
gccattagaagagctactgtaaatacatttggctacattgccaaagccattggtcctcac
gatgtgttggccactttattgaacaacctgaaggttcaagaaagacagaacagagtctgt
acaactgtggctatagccattgttgcagaaacttgttcaccatttactgttcttcccgcc
ttgatgaatgaatacagggtaccagaacttaatgttcaaaatggtgttttaaagtctctt
tcattcctgtttgaatacattggtgaaatgggaaaagattacatctatgctgtgacacct
ttacttgaagatgctttaatggacagggatctagtccacagacaaacagcttgtgctgca
attaaacacatggccttgggagtgtatggctttggttgtgaagatgcacttattcattta
ctcaaccatgtctggcctaatatttttgaaacttcacctcatcttgtgcaagcattcatg
gactccattgaaggaatgcgcgtagctcttggtcccatcaagatacttcaatacacatta
cagggcttgttccacccagcacggaaagtacgtgatgtatactggaagatctacaattct
ttatacattggaggacaagatgctcttgtggggggatatcctagggttgaaaatgaccct
aaaaacatttatgcacggtatgagttggattatgtactgtaa

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