Tetrapisispora phaffii: TPHA_0C02850
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Entry
TPHA_0C02850 CDS
T02235
Symbol
TPHA0C02850
Name
(RefSeq) hypothetical protein
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03018
RNA degradation
tpf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TPHA_0C02850 (TPHA0C02850)
09123 Folding, sorting and degradation
03018 RNA degradation
TPHA_0C02850 (TPHA0C02850)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0C02850 (TPHA0C02850)
03041 Spliceosome [BR:
tpf03041
]
TPHA_0C02850 (TPHA0C02850)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TPHA_0C02850 (TPHA0C02850)
mRNA degradation factors
5'-3' decay
Lsm complex
TPHA_0C02850 (TPHA0C02850)
Spliceosome [BR:
tpf03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
TPHA_0C02850 (TPHA0C02850)
Complex C
U2 snRNP components
TPHA_0C02850 (TPHA0C02850)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Gemin7
Motif
Other DBs
NCBI-GeneID:
11533637
NCBI-ProteinID:
XP_003684872
UniProt:
G8BRR2
LinkDB
All DBs
Position
3:join(618333..618386,618546..618779)
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AA seq
95 aa
AA seq
DB search
MLFFSFFKTLVDQEVTVELKNDIELKGTLKSVDQFLNLKLDNISCNDKTKYPHLTSVRNI
FIRGSNVRYVYLQKNMVDTNLLQDAARREAMSDKR
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgttatttttttcctttttcaaaactcttgtggaccaagaagtcaccgttgaattaaag
aatgatattgaattgaaaggtacattgaaatcagttgaccaatttttaaatttgaaatta
gataatatatcatgtaatgacaagacaaaatatccacatttgacatccgtaaggaacatt
ttcataagaggatctaatgtaagatatgtatatttacaaaagaacatggttgacactaat
ttattacaagatgcagcaagaagagaagcaatgagtgacaaacgttaa
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