KEGG   Tetrapisispora phaffii: TPHA_0C02850
Entry
TPHA_0C02850      CDS       T02235                                 
Symbol
TPHA0C02850
Name
(RefSeq) hypothetical protein
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
tpf  Tetrapisispora phaffii
Pathway
tpf03018  RNA degradation
tpf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tpf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TPHA_0C02850 (TPHA0C02850)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TPHA_0C02850 (TPHA0C02850)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpf03019]
    TPHA_0C02850 (TPHA0C02850)
   03041 Spliceosome [BR:tpf03041]
    TPHA_0C02850 (TPHA0C02850)
Messenger RNA biogenesis [BR:tpf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     TPHA_0C02850 (TPHA0C02850)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     TPHA_0C02850 (TPHA0C02850)
Spliceosome [BR:tpf03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    TPHA_0C02850 (TPHA0C02850)
 Complex C
  U2 snRNP components
    TPHA_0C02850 (TPHA0C02850)
SSDB
Motif
Pfam: LSM Hfq Gemin7
Other DBs
NCBI-GeneID: 11533637
NCBI-ProteinID: XP_003684872
UniProt: G8BRR2
LinkDB
Position
3:join(618333..618386,618546..618779)
AA seq 95 aa
MLFFSFFKTLVDQEVTVELKNDIELKGTLKSVDQFLNLKLDNISCNDKTKYPHLTSVRNI
FIRGSNVRYVYLQKNMVDTNLLQDAARREAMSDKR
NT seq 288 nt   +upstreamnt  +downstreamnt
atgttatttttttcctttttcaaaactcttgtggaccaagaagtcaccgttgaattaaag
aatgatattgaattgaaaggtacattgaaatcagttgaccaatttttaaatttgaaatta
gataatatatcatgtaatgacaagacaaaatatccacatttgacatccgtaaggaacatt
ttcataagaggatctaatgtaagatatgtatatttacaaaagaacatggttgacactaat
ttattacaagatgcagcaagaagagaagcaatgagtgacaaacgttaa

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