Tetrapisispora phaffii: TPHA_0M00260
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Entry
TPHA_0M00260 CDS
T02235
Symbol
TPHA0M00260
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TPHA_0M00260 (TPHA0M00260)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpf03400
]
TPHA_0M00260 (TPHA0M00260)
Enzymes [BR:
tpf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TPHA_0M00260 (TPHA0M00260)
DNA repair and recombination proteins [BR:
tpf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
TPHA_0M00260 (TPHA0M00260)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
RNA_ligase
BRCT
mRNA_cap_enzyme
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
11532028
NCBI-ProteinID:
XP_003688037
UniProt:
G8C0U2
LinkDB
All DBs
Position
13:complement(50326..53226)
Genome browser
AA seq
966 aa
AA seq
DB search
MTSVPNMNIDTSEREPRNFSPSPDFKWLCNELFVKLDEVRLKPKSVDTRPKNIQYDIVIN
NFIHLWRVTVGNDIYPALRLILPYRDRRNYYIREHTLIRIVCDYLKLQKNSVTEQRLRRW
KQKARRSINLSSFCIQEIKKRLSEPVSKEKITIDKLNSILDSLSMERSSSKITNGSSGKK
LSQLESIKYCFENMSFIELEYFFDILIKARLIGGLEHKFLNAWHPDANDYLSVVSELNIV
TEKLWNPNFRLNSKDLTIALHNAFEPQLAKKVNLSYEVLSRRMNNKFTIEEKMDGERIQI
HYMDYGHQIKYFSRRGNDYTYLYGKDKSTATISKYLQLNEDVKECILDGEMVSYDKSRNC
ILPFGMVKSGAANSLKIDGLENDLCSPLFIVFDVLFLNGSPLTNLPLYQRKEYLSNILTP
KKSHIEILKFSIAHDSESIRSALQAAISVGSEGIVLKKYDSLYSVGDRNNDWIKVKPEYL
EQFGENLDLIVIGRDPGKKDSLMCGVAVLENEESYEKILQEEVITLTSDDDDSQNNIPED
KPIRTKRITKFISFCVIANGISNEEFKEIDRKTFGCWKKFSDEAPPTDYLEFGTRLPVEW
INPHDSVVLEVKARSLENNEALRDKFKTGYTLYGAYCRRIRTDKDFNDCYTFSDLVIATN
KKRSSSELYGNHSHIKKKRSRTSKVNMLNQTLSIQDDDTGFTSKIFDGLSFFVISDYVDS
NSSFRLRIDELINIIKVNGGQLIFNLVSQNLNEKYVRIMSCKKTFECNELIKRGYDIIHP
KWILDCIANDKLLDFEPSHCFNVSQSLSTISKQRVDLLGDSYQKYITEEELELLISSKTP
KEQLYSNPLQFDQQIEKIPIFLFSNKKAYTPKQCFSEKLLKETNLYIKLYGGTSVNNIND
CNVIIIGDEHSKSSNEKISSIRKELSIHAVSSNNVIPIPRIVSYKWIEKSIAQGTQVVEE
DFPIIF
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgacatcagttcccaatatgaatatagatacctcagaaagagagcctcgtaacttttct
ccttcaccggattttaaatggctttgtaatgaactttttgttaaacttgatgaggtacgt
ttgaaaccaaaatcagttgacacaagaccgaaaaatattcaatatgatattgttataaat
aattttatacatctttggagagttacagttgggaatgatatatatcctgcattaaggttg
attctaccatatagagatagaaggaactattatattagggaacacacattaataaggata
gtttgtgactatttgaaattacagaaaaattcagttactgaacaaagactgagaagatgg
aaacaaaaggctagacgttccattaatctgtcctccttttgcattcaagaaataaagaaa
agactttcagagccagtatcaaaagagaagatcacaattgataaactaaattctatactc
gattccttatcaatggagaggagcagttctaaaattacaaatggatcatctggtaagaaa
ttatcacagttagaatccataaagtattgctttgaaaatatgagctttattgaattagaa
tacttttttgatatcctaataaaggcaaggttaataggtggtttggaacacaaattttta
aatgcctggcatcctgatgctaacgattatttaagtgtagtatctgaattaaatatcgtt
acagaaaaactttggaatcctaactttaggttaaattccaaagatctgacaattgcgtta
cataatgcatttgaaccacaactagccaaaaaagtcaatctttcatatgaggtactttct
aggaggatgaacaataagtttaccatcgaagaaaaaatggatggtgaaagaattcagatt
cattatatggattatggtcatcaaataaaatactttagtagacgtggaaatgactatacg
tatttatatggaaaagacaaaagtactgcaacaatatcaaagtatttgcagcttaatgaa
gacgtaaaagaatgtatattggatggagaaatggtgagttacgataaatcaagaaattgt
attttaccatttggtatggttaaaagtggagctgcaaattctttaaaaatcgacggactt
gaaaatgatctctgtagtccattgtttatagtttttgatgttttatttttgaatgggtcc
ccattaacaaatttaccattataccaaaggaaggaatatctgagtaatattttaactccc
aaaaaatcacacatagagatattaaaattttctatagcgcatgacagtgaaagtatccga
tcagcattacaagctgccatatcagtaggttcagagggaattgtactaaaaaaatatgat
tcattatattctgttggagataggaacaatgattggataaaagttaaaccagaatatttg
gaacaatttggagaaaacttagacttaattgtcattggaagagatcctggaaagaaggat
tctttaatgtgtggagtagcagttctagaaaatgaggagtcttatgaaaaaattttgcag
gaagaagtcataactctgacttccgatgatgatgatagtcagaataatattcctgaggat
aaaccaatacgaactaaaaggataacaaaattcatatctttttgcgtcattgcaaatgga
atttctaatgaagaattcaaagaaatagatagaaaaacttttggctgttggaagaaattt
tcagatgaagcaccaccaacggattaccttgaatttggaaccagattacctgtggagtgg
atcaaccctcacgattctgtagttttagaagtgaaagctaggtctttagaaaataatgaa
gctttgagggataaatttaaaactggatatactctttatggagcatattgtagacgaatt
cgcacagacaaggattttaatgattgctatacattttctgatcttgtaatagcaacaaat
aaaaaacgaagttcttcagaactgtatggcaatcattctcatataaaaaagaaacgaagt
agaacatcaaaagttaacatgctaaaccaaaccctttctatacaagatgatgatacaggc
tttacttcaaagatatttgatgggttatccttttttgtcatttctgattatgtggatagc
aattcttcttttagattacgaattgacgaacttatcaatataattaaagtgaatggtggt
caactgattttcaatttagtttctcaaaacttgaatgagaaatatgttagaattatgtcg
tgtaaaaaaacattcgaatgtaatgaattaataaaaagaggttatgatattattcaccca
aaatggatacttgactgtattgctaatgacaaattgttggattttgaaccaagtcattgc
ttcaatgtatcacaatcactatcaacaataagcaagcaacgagtagacctcttaggtgac
agttatcaaaaatatatcacagaagaagagttggaactacttatttcttccaaaactcca
aaagagcagctttattcaaatccactacaatttgatcaacaaattgagaagatacctata
tttttattttcgaacaaaaaagcatatactcctaaacaatgtttttctgaaaaattacta
aaagaaactaatttatatattaaactttatggaggtacttccgttaataacattaatgat
tgtaatgtaataataattggtgatgaacattctaaatcgagtaatgaaaaaattagttca
attaggaaagaactatctatccatgctgtaagcagtaataacgtgattcctattcctagg
attgttagttataaatggattgaaaaatcaattgctcaaggaactcaagtagtagaagag
gattttcctattattttctaa
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