Candidatus Tremblaya phenacola: TPPAVE_179
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Entry
TPPAVE_179 CDS
T02908
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta prime
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tpj
Candidatus Tremblaya phenacola
Pathway
tpj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TPPAVE_179 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpj03021
]
TPPAVE_179 (rpoC)
03400 DNA repair and recombination proteins [BR:
tpj03400
]
TPPAVE_179 (rpoC)
Enzymes [BR:
tpj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TPPAVE_179 (rpoC)
Transcription machinery [BR:
tpj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TPPAVE_179 (rpoC)
DNA repair and recombination proteins [BR:
tpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TPPAVE_179 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
M60-like_N
Motif
Other DBs
NCBI-GeneID:
17622976
NCBI-ProteinID:
AGO28358
LinkDB
All DBs
Position
complement(137903..141865)
Genome browser
AA seq
1320 aa
AA seq
DB search
MIRDCETRMPSQIKMKDWVEVVTIKVASPTKLHSWSFGEVKKAETFSLKALHPIEDGLFC
CKIFGPLKDFECSCRKYRSPRFSGVICEECGVEITFSDVRKERMGHIRLALPVYHIWFLK
TSSLVLGSVLGKTPSEIERLLYYEAHIIIDPKTSKLPSMSIMLTDDIANCCSGLKDKPKT
KSGAKAIRHLLQLVNIEKLRLSLEEDLELLKPGQNGIKIAERLATLKNLQGSEVDPEWLI
LDIIPVLPPDQRPVVSLEEGKFVTTDLNDLYCKILNRNGRLERLIFLKAPQLIIQNEKRM
LQEAVDRLIDNGRRVPINIGLERRPHKSLTEMLKGKTGRFRQNLLGKRVDFSGRTVITVG
PELKLHQCGIPKQIISELFRPFFTPLDSLGRNKKDNSLTQPQKIEWSEIVKNYSILLNRA
PTLHRLGIQAFDPIVIDGKAIQLNPLVCSAFNADFDGDQMAVHLPLTTEAQIEAKVLMSP
INNPLLPTNDRPAFLPTQEAVLGLYFGSKEEKRWHTNSKCPYYSSVENVEKALWVGSLKL
NELINVLVTEKLKIRNKLIKSHRSYNTTAGRCLLFRLLPEGLSFNLFNRAIKKKDLSEIV
YLALNRCKASITAYLVEKMLAIGFEIATRSGLSLSISNFCIPKIKSDVIENTIQNSKLLS
RKEDKIVLWASISDFIKDRMLKEMEESLVQTKQLGQIINPVFIIADSGARGSVAQIRQMA
GMRGLMVKPDGSILETPITANFREGLNTIQYFISAHGARKGLADTALKTANSGYLTRRLA
DVSHSITIKETDCGTSLGLKIFKTSQLETDFEYSIRNSVGRFLTDHPIQLQPQHHDLPIK
KGELEELMLKKEKNYYSIRSPATCESVAGICSKCYGYDLSHKSQSNVGEAVGIIAAQSIG
EPGTQLTMRTFHIGGTASFKKQLDKRAQTVGHVQFGLDLKFIRTHKNKNIVVSKSGTISI
INKAGMISDNFIVPYGSVLSVKNYETVVFPFNLFFRHSNRTLIFSEVEGRIKFGVEDKKN
ITKKAKIQTHLVMLVRDASYQIAGLMVFPTTAVTLSIMNCQQLKVGQVIGQEKQTQKQNK
DITSGVILISDLFEIRNESAPQVLAEASGIIHINPFPNRIEIMIIGSKTTKMKIPIQFFG
QQTALKNLQQVGRGEVLVEGAENYYDILRLRGTGPLINSILRAVQQIYRTQDVEINNKHI
EIVIKQMLRFVIIITEGSTKFFKGEQLERTEVIKLNQQIEKLGKQPATFKPMLLGISKSS
LMSKSFLSGASFQETAKILAKAASLGCRDTLFGLKENVIVGRMIPAGTGLLYHQNKNEIL
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgattagagattgtgagactagaatgccatcccaaatcaaaatgaaagattgggttgaa
gttgttacaattaaagtggcttcaccaacaaaattacattcttggtcttttggtgaagtt
aagaaagcagaaacgttcagtcttaaagctcttcacccaatagaagatgggctgttttgt
tgtaaaatatttgggcctttaaaagattttgaatgttcttgtagaaaatacagatcgccc
agatttagtggggtgatctgcgaggaatgcggtgttgagattacattctcagatgttagg
aaagaaagaatgggccatattagattggccctcccagtttatcatatttggtttcttaaa
acctcatctttagttttgggttctgttttaggaaaaaccccatcagaaattgaaaggctc
ctttattatgaagctcatattattattgatccaaaaacatcaaaattgccatcaatgtcc
atcatgttaactgatgacattgcgaattgctgttctggtttgaaagataaacccaagact
aaatcaggggccaaagcaataaggcacctgttacaattggttaatattgaaaaattaaga
cttagtttggaagaagacttggaattattaaaaccaggtcagaatggaattaaaatagca
gaacgtctagcaactttaaaaaatctgcaagggtctgaagtagatccagagtggttaata
ttagacatcattccagtcttgcctccagaccagaggccagtagtttctttagaagaaggg
aagtttgttacaacggatctgaatgacctctactgcaaaatcttgaatagaaatgggcgt
cttgaacgtcttatctttcttaaagctccccaactcataattcagaatgaaaagcggatg
ttacaagaagcggtggatcgtttaatagataacggcagaagagttcctattaatattgga
ttggagagaaggcctcataaatcactaactgaaatgttaaaaggtaaaactggaagattc
agacagaatcttttagggaaaagagtagatttctcaggcagaactgtgattactgttgga
ccagaactaaaactgcatcagtgcggaataccaaaacaaattattagcgaactttttagg
cccttctttaccccactagattctttaggcagaaacaaaaaggacaactcattaacccaa
ccccaaaagattgagtggtctgagattgttaaaaactattcaattttgcttaatagagcc
ccaaccctccaccgcctaggcattcaagcttttgatccgattgtaattgatggtaaggca
attcagcttaacccactagtttgttcggcatttaatgctgactttgatggtgatcagatg
gcagtccatttacctctaacaactgaagcacagattgaagcaaaagttttgatgtcgcca
ataaacaaccccctcctcccaacaaatgatagaccagctttccttccaacccaagaagct
gttttaggattgtactttggatcaaaagaagagaagcgatggcatacgaacagcaaatgc
ccttattattcaagcgtagaaaatgtagaaaaagctttatgggttgggtcacttaaatta
aatgaattaattaatgtgttagtaactgaaaaacttaaaataagaaacaaattaataaaa
tctcatcgatcttataatacaacagcaggaaggtgtttgttattcaggctattacctgag
ggccttagttttaatctttttaatcgagccattaagaaaaaagatttatcagaaattgtt
tatttagcacttaacaggtgcaaagcttcaattacagcatatttagttgaaaagatgtta
gctattgggtttgaaattgcaacaagatcgggcctttctcttagtatctcaaacttctgc
attccaaaaattaaatctgatgtaattgaaaacaccatacaaaatagtaagcttttaagc
agaaaagaagataagattgtgctttgggcttccatctctgattttattaaagacaggatg
ttgaaagagatggaagaatctttggttcaaacaaaacaacttggacaaattattaatcca
gtttttatcatagcagattcaggggcaagagggtctgttgcccaaattaggcaaatggca
ggaatgagggggttgatggttaaacctgatggatccattttagaaacaccaataacagct
aattttagagagggactgaatacaattcaatattttatttcagcacatggggctagaaaa
ggactagctgatactgcactgaagactgcaaactctggatatctgactagaagattggct
gatgtttctcacagcataacaataaaagaaacagattgtgggacatcattaggactcaaa
atatttaaaacatcacaattggaaactgattttgaatattcaattagaaacagtgttggg
agatttttaacagaccacccaattcagcttcaaccgcaacatcatgaccttccaattaaa
aaaggtgagttagaagagttgatgctaaaaaaagaaaagaattattattcaatcagatct
ccagcaacgtgtgaatctgttgctggcatatgctcaaaatgttatgggtatgatctttct
cataaatcccaatcaaatgttggtgaagctgttggaatcattgcagcacaatctattgga
gaacctggaacgcagttaacaatgagaacatttcatattggtggaacggcatcttttaaa
aaacaattagataaaagagctcaaactgttgggcatgttcaatttggattggatctgaag
tttattagaactcacaaaaacaaaaatattgttgtctcaaaatctggaactattagtatt
attaataaagctggtatgatttctgataattttattgtgccgtatggatccgtcctttct
gttaaaaattatgaaaccgttgtcttccctttcaacctgttctttaggcattcaaacaga
actttaatattttcagaagttgaaggcaggattaaatttggggttgaagataaaaaaaat
ataacaaaaaaagcaaagatccaaacccatttagttatgcttgtacgtgatgcttcatat
caaatagctggtttgatggtgttcccaacaacagcagtaacactttcaattatgaactgc
cagcaattaaaggttggacaagtgattgggcaggagaaacaaacccaaaaacaaaataaa
gacataacgagtggggtaatactaatttctgatttgtttgaaattaggaatgaaagcgcc
ccccaagttttagctgaggcatctggtatcattcatattaatccttttccaaacagaatt
gagattatgattattggatctaaaaccacaaaaatgaaaattccaatccaattctttgga
caacaaacagcactaaaaaatttacaacaggttgggaggggtgaagtgctagtagaagga
gcagaaaattattatgatattttaagattgagaggtactgggccccttatcaactcaata
ttgagagctgtacaacaaatctacagaactcaggatgttgagataaataataaacatatt
gagattgttatcaaacagatgcttaggtttgtcataattatcacagaaggaagcactaag
ttttttaaaggtgaacagcttgaaagaactgaggtaataaagctgaaccaacagatagaa
aaattaggaaaacaaccagcaactttcaaaccaatgcttttgggaatttccaaatcatct
ttaatgtcaaaatcattcttgtctggcgcatcctttcaagaaacagctaagatcctagca
aaagcagcatctttaggttgcagagacacgctttttgggttgaaagaaaatgtgattgtt
ggtaggatgattcctgctggaaccgggcttttgtatcatcaaaacaaaaacgaaatttta
tga
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integrated database retrieval system
