Trifolium pratense (red clover): 123884208
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Entry
123884208 CDS
T08949
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123884208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123884208
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123884208
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123884208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
123884208
NCBI-ProteinID:
XP_045789212
LinkDB
All DBs
Position
LG5:complement(56928090..56951569)
Genome browser
AA seq
2393 aa
AA seq
DB search
MTLGSSRTMAIFSSSASNQIRFLLNSFNQLNFDSVFHQLSQFAEFGTAGCILLLQTCLDH
FNYVRRDRNDMQHEPIIVAVVKYLLDKPNFSTVFSESMKNVEINESFLENFCNGLQLSLL
EKIAISLALSDSENPDARLCGKNFCMAQIEELCANPGSLSCHERIHSVIMFLKQSEGLSE
HVDSFMQILSLVQFKDTPPFVLTPLLPDEMHGADFLRWNMEFNECEENDFDAILADIQKE
MNMGDIVKELGYGCTVDVSQCKEVLSLFLPLTDNMLSKLLGAIAHTHAGLEDNQSTFLTF
GAALGYNNLSELPLLNSWNIDVLIDTVKNIAPQTNWVRVIENLDHEGFYLPSEEAFSFLM
SVYKHACKEPFPLHAVCGSVWKNTEGQLSFLKYAVSAPPEVFTFAHSARKLAYVDAINGH
KLQNGHANHAWLCIDLLDVLCQLAEMGHANVVWSILDYALKHCPEILLLGIAHVNTTYNL
FQREVSLIVFPMIVKSDVGSGMILHLWHINPNLVLRGFMDSQNHDVDSIMRIVDICQELK
ILSQVVEIIPSYYSIRLAAVASRKEILDLEKWLSNNLTTYKEAFFEECLKFLKEVQAGGS
QNLSGQSFHQSGGVLNLFTETTATFLKVLKSHTDLVTSGQVSEELEKLHISIIDSNPSLQ
NSGTTDSSASNGFPKDVETDANNIFQDMFHDKIPVPNVVQRLIRFKESSVKRENLIFECM
IANLFDEYKFYPRYPEMQLKIAGVVFGSAIKYHLVTHLSLGIALRYVLDALRKPADSKMF
MFGSLALEQFVDRLIEWPQYCNHILQISHLRSTHSEIVAFIEQALARISSGHTDVDGTSH
TSVISNHSSAQTALAHAELSGSSMIQPGQQHLSPQLQQRRENPLDDRHKPPVGSSTDTRP
PLASLGQSPVITPADTSSPNRIPGTVSASSMLSSSPGFVRPPRGTTSTRFGSALNIETLV
AAAEKRETPIEAPGSEVQDKISFIINNISSSNFEAKAKELTEILKEQYYPWFAQYMVMKR
ASIEPNFHDMYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSW
LGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQNSLAYQPPNPWTM
GILGLLAEIYSMPNLKMNLKFDIEVLYKNLGVDMKDVTPTSLLKDRKREIEGNPDFSNKD
VGASQSQMIEKPPPLVPPVNQVELPLEVTNPSNTGAHPHLMSQYAGSHHISTGTLMDDDN
IPPLGLSDQLPSAQGLLQANTTPAPFQLPTQIQSIGTHVVINPKLNHLGLQLHFQRAVPI
AMDRAIKDIVNSIVKRSVSIATQTTKELVLKDYAMESEEKRIKNAAHLMVASLAGSLAHV
TCKEPLRASISSQLKASLQSLSIANDILDHAVQLVTNDNLDLGCAVIEHAATEKAINTID
TEISQQLSLRKKHMGSTFFDTNLYPQGSMGGVPEPLRPKPGQLSLSQQRVYEDFVRLPWQ
NQSSQSSHSTAVQSANSGLTGTSAPASGQINPSYSLNTGYEGVSRPIDDMPESNFTPHYS
ASSIHIRSAGNASQHSRENDSVASFPSTASTPELHTVDSSDAVKEPGASSQPLVSSGAVD
RIGSSFLEPSLTTRDALDKYQIVAQKLEALVNNDSREAEIQGVISEVPEIILKCVSRDEA
ALAVAQKVFKGLYDNASNNVHVGAYLAILTAIRDVCKLAVKELTSWVIYSDEERKYNKDI
TVGLIRSELLNLTEYNVHMAKLIDGGRNKAATEFSISLLQTLVIEEPKVISELHNLIDAL
AKLAIKPGYPESLQQLIEMIKNPAALSASNAGKEDKAKQLRDNKAPGLLVVNRVESAEPD
PAGFRDQVAMLFGEWYRICDLPGANDTATTHFIVQLHQSGLLKGDDMTDRFFSLLMEIAV
SHCLSTEGINSGALQSPQQMPTMSFLAIDTYAKLVFSILKGSSKVLLPKILAVAVRFIVK
DAEEKKVSFNPRPFFRLFINWLLDLGSLEPVTDGANLQILTAFANTFHALQPLKVPGFSF
AWLELVSHRSFMPKMLTGNGQKGWQHIQKLLVDLFQFMEPFLRHAELGDPVRVLYKGTLR
VLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLPDPSTPNLKIDLLQE
ITQSPRILSEVDAALKAKQMKADIDEYLKTEQGTPFLSELKEKLLLSPNEVASAGTHYNV
PLINSLVLYVGMQAILDIEVRNQHAQSVTNALNLYSATNSSTNASLEIFKALIVDLDTEG
RYLFLNAVANQLRYPNTHTHYFSFVILYLFAELNQEIIQEQITRVLLERLIVNRPHPWGL
LITFIELIKNLRYNFWNRSFIRCAPEIEKLFESVSRSCGGPKPVDESMVSGWV
NT seq
7182 nt
NT seq
+upstream
nt +downstream
nt
atgactctcggttcttcgcgaactatggccatcttttcctcctcagcttccaatcagata
cgtttccttctcaactctttcaaccaactcaactttgactccgttttccaccaactctct
cagttcgctgagtttggaacggctggatgcattttgctgcttcaaacttgcttggatcac
tttaattatgtcagaagagatagaaatgatatgcaacatgagccaattattgtggcagtc
gttaagtacctcttggacaaaccaaacttcagcacagtgttttctgagtcaatgaagaat
gtagaaattaatgaaagttttttagaaaacttttgtaatggattacagttgtctttattg
gaaaaaattgccatcagtcttgctttatctgattctgaaaatcccgatgccaggctatgt
ggcaagaatttttgcatggctcagattgaagaattgtgtgcgaatcctggttctttgagt
tgccatgagcgaattcacagtgttatcatgttcctcaagcagtctgagggtctttctgag
cacgtagattccttcatgcagatattatcgctggtgcagttcaaggacacaccgcctttt
gttttgaccccattgctacctgatgagatgcatggagctgattttttacggtggaacatg
gagttcaatgagtgtgaagaaaatgattttgatgctattttggctgacattcaaaaggaa
atgaacatgggagatattgtgaaggaactaggctatggatgcacagttgatgtctcacag
tgcaaagaagtattgtcactcttcttacctttaactgataatatgctctctaaactactt
ggtgctattgcacacacccatgctgggctggaggataaccagagcacatttttaactttc
ggtgcggcccttggatacaacaacctgtccgagttgccactgctgaactcttggaatatt
gatgttttgatagatacggtcaagaatattgcaccacaaaccaattgggttcgggttatt
gaaaatcttgatcatgaaggattttaccttcccagcgaagaagcattttcttttctcatg
tctgtttataaacatgcctgtaaggaaccatttccgctccacgccgtatgtgggtctgtc
tggaagaacaccgagggtcagctctctttccttaaatatgctgtgtctgcaccaccagaa
gtgtttacatttgcacactctgcgaggaaactggcatatgttgatgcgattaatggacac
aagcttcaaaatggacatgcaaatcatgcatggctgtgtattgaccttttggatgtcctc
tgccagctagctgagatgggtcatgccaatgttgtttggtcaattcttgattatgccctt
aaacattgtccagaaatattgcttcttgggattgcgcatgttaatactacttacaacctc
ttccagcgagaagtatctctgattgtttttcccatgatagtaaaaagtgatgtcggcagt
ggaatgattctacacctttggcacataaatcccaatctggtcctgcgaggctttatggat
tctcaaaaccatgatgtagacagcattatgagaattgtggacatttgccaagagcttaag
attctatcacaagtggtggaaattattccctcttattatagtataaggctagcagctgtt
gcttcaagaaaagaaattcttgaccttgagaagtggttgagtaacaacttaactacgtac
aaagaggccttctttgaggagtgcctgaagttcttgaaggaagtccaagctggcggatca
caaaatctatctggccaatcgtttcatcagtctggtggcgttctgaacctctttactgag
acaactgctacgttcttgaaggttctcaaatctcatactgacctggttacctctggacaa
gtttctgaggagctggagaagttgcatatatctattatagattccaatccaagtcttcaa
aatagcgggactactgattcatctgcttctaatggatttccgaaagatgttgaaactgat
gcaaacaatatcttccaagatatgtttcatgataagatacctgtccctaatgtggtgcaa
aggctaatccgattcaaggaatcttctgtgaagagggagaacttgatttttgaatgcatg
attgcaaacttgttcgatgagtataagttttatccaaggtatccagaaatgcaactcaaa
attgctggagttgtcttcggttctgcgatcaagtatcatcttgtgacacatctctctctc
ggaatagcgcttcgatatgttcttgatgcattgcgcaagcctgcagattctaaaatgttt
atgtttggaagtttggcactagagcaatttgtggatcgtcttattgagtggccccagtat
tgcaatcacattttgcaaatttcccatttgcgcagtacacattccgaaatagttgctttc
atcgaacaggctcttgctagaatatcctctggtcatacagatgtagatgggacaagccac
acttctgttatcagtaaccatagttctgcacagactgcattagctcatgcagagctcagt
ggctctagcatgatacaacccggacagcagcatttgtcaccgcagcttcaacagagacgt
gaaaatcctttggatgatcgtcacaagccccctgttggttcatctactgatacgagacca
ccattagcttctctagggcaatctccagtgattacaccagctgatacttctagtcccaat
aggataccaggcacagtcagtgcctcgtcaatgttatcttcttctcctggttttgtccgt
ccgcctcgtggaactacttctaccaggtttggatctgccttgaatattgagactttggtc
gctgctgcagagaaaagagaaactcctatagaggctccagggtcagaggtccaggacaaa
atatcattcataattaataatatctcgtctagtaattttgaagccaaagcaaaagagctc
actgaaattctgaaagagcagtactatccatggtttgcacagtatatggttatgaaaaga
gctagcattgagccaaatttccatgacatgtacctgaaattcctcgataaagttaattca
aaggctttgaacaaagagattgtccaggcaacatatgaaaattgcaaggtgcttttagga
tcagaacttataaagtcaagttcagaagagcgctctttgcttaaaaatcttgggagctgg
ctcggaaagttgacaattggacggaatcaggttttgagggcccgtgaaatagatccaaaa
tctttgattatagaggcatatgagaaggggctgatgattgctgttattccatttacttca
aaggtccttgaaccatgccaaaacagtcttgcatatcaaccccctaatccttggaccatg
ggcattttaggattgcttgctgagatttattcaatgccaaacttgaaaatgaacctcaag
tttgacatagaggttttatacaaaaatcttggtgtagatatgaaggatgtcacaccgact
tctctccttaaggatcgtaaaagagaaattgaaggaaatcctgatttctctaataaagat
gttggggcatctcaatcacaaatgattgagaagccgcccccccttgttcctccagtgaat
caagttgagctaccgcttgaagtcaccaatccatccaatactggggctcatccacatttg
atgtctcagtatgctggctcacatcatatttccacgggaacattgatggatgatgacaat
ataccacccctgggtttgtctgatcaactaccttctgctcaaggactgttgcaagcaaat
actaccccagcaccattccagctcccaacgcagattcaaagtattggaactcatgttgtt
ataaatccaaagctcaatcatttggggttacagcttcattttcaacgagcggtacccatt
gcaatggacagagccatcaaagatatagtgaacagtattgtgaagcgtagcgtttccata
gcaacccagacaacaaaggaacttgttttaaaggattatgctatggaatcagaggagaaa
cgtattaaaaatgcggcacacttgatggttgctagtctggctgggagtttggctcatgtg
acatgcaaagaacctttacgcgcatcaatatcaagtcaactgaaggcttcacttcagagt
ttaagtattgcaaatgacattttggatcacgctgtgcagcttgtgaccaacgataatcta
gatcttggttgtgcagtcattgaacatgcagctactgaaaaggcaataaacaccatcgat
acagagattagtcaacaactttcattgagaaagaagcatatgggttctacattttttgat
acaaacttgtatccacaaggttcgatgggtggtgttccagagccccttcgccccaaacct
ggtcagctgtcactgtcacagcagcgtgtctatgaggactttgttcggcttccttggcaa
aaccagtctagccagagctcacattcaactgctgttcaatctgctaatagtggtctcacg
ggcaccagtgctcctgcatcgggacagataaaccctagttactctctaaacacaggatat
gagggggtctctcgaccgatagatgatatgccagaatcaaattttactccacattatagt
gcttcgtcaattcacattagatcagctggaaatgcttctcagcatagtagggagaacgac
tctgttgcctcatttccttcaacagcttccacccctgagttgcacacggtggattcttca
gatgctgtgaaagaacctggagcttcttcacagccactggtttcatcaggtgccgtggat
cgcattggaagtagtttcttggaaccatctctcactacaagggatgctctggataaatac
caaattgttgcacagaagttggaagctttggttaacaatgattcaagagaagcagaaata
cagggagtcatttctgaggtacctgagatcatactcaaatgtgttagtcgagatgaggca
gctttagctgtggctcaaaaggttttcaagggtttatatgacaatgcttcaaacaacgtt
catgtcggtgcttatcttgcaatcctgactgccatccgtgatgtttgcaagcttgctgtc
aaggagcttactagttgggtaatttactcggacgaagaaaggaaatataataaagatatt
actgttggtcttatccgcagtgaactgctaaatctaactgagtacaatgttcatatggca
aaacttattgacgggggaagaaataaggctgctacagagttttcaatctctcttcttcaa
accctggtcatcgaggaaccaaaagttatttcagaacttcacaatcttattgatgctttg
gcaaagcttgctataaagcctggataccctgaatcgttacaacaacttattgagatgatc
aagaatcctgctgctctatctgctagtaatgctggaaaggaggataaggcgaaacagtta
agagataataaggctcctggtctgctagttgtaaacagggtagagtctgctgaacctgat
cctgctggattccgtgaccaggttgccatgttgtttggtgaatggtataggatatgtgat
cttcccggtgccaatgatacagctactacccacttcatcgtacagttgcaccagagtggg
ctgcttaagggggatgatatgacagatcgcttttttagtctgttgatggaaattgcggtt
tcgcattgcttatccactgaggggataaattcaggggcactgcaatcccctcaacagatg
ccgacaatgtcatttcttgcaattgatacttatgcaaaacttgtcttttcaatcttgaag
ggatcaagcaaagttcttctccccaagattctggcagttgctgtcaggttcattgtaaag
gatgcagaggagaagaaggtctcttttaatccaagaccattttttagattgttcatcaat
tggcttttggatcttggctcacttgaacctgttactgatggggcaaatctccagattttg
actgcttttgccaatacatttcatgctctacagccactcaaagttcctggattcagtttt
gcatggctggagttggttagtcataggagctttatgcctaaaatgctgactggtaatggt
caaaaaggttggcagcatatccaaaagttgcttgtagatctgttccaatttatggagcct
tttttgaggcatgccgaactaggagacccggtccgtgttctctataaaggcacacttagg
gtgcttttggtgctacttcatgatttcccagagttcctatgtgactatcactttaccttc
tgtgatgtcatccctccaagttgcattcagatgcgaaatatcatcctaagtgcatttcca
cgtagtatgagactgccagatccttcaactccaaatttaaagattgatttgcttcaagaa
ataactcaatcccctcgcattctttctgaggttgatgcagcactgaaagcaaagcagatg
aaggctgacatagacgaataccttaagacggaacagggtactccatttttgtctgaatta
aaagaaaagctactcctctcacccaatgaagttgcctctgccggcactcattacaatgtg
ccattgatcaactcccttgtactgtatgttggaatgcaggcaattctggatatcgaggta
cgaaatcaacatgcacaatcagtaacaaatgcactcaatctatattctgctacaaattct
tctacaaatgcttctttggagattttcaaggcactaatcgttgacttggacactgaagga
cgctaccttttcctaaatgctgttgctaaccaactacgttatcccaatactcacacacat
tacttttccttcgtcatcctttatttgtttgcggaattaaaccaggaaattatccaagaa
caaattacacgagtcttgctagaacgccttattgtaaaccgaccacatccctggggcctt
ctcattactttcatcgagttgatcaagaatctaaggtataatttctggaaccggtctttc
ataagatgcgcaccagagattgaaaaactttttgaatcagtctcaagatcttgtggaggt
ccaaaaccagttgatgagagtatggtctcgggttgggtttga
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integrated database retrieval system
