Trifolium pratense (red clover): 123892025
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Entry
123892025 CDS
T08949
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123892025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123892025
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
123892025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
123892025
NCBI-ProteinID:
XP_045797836
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All DBs
Position
LG6:27525001..27528835
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AA seq
1016 aa
AA seq
DB search
MSEGCSDDVKNENFSNVKCGFERENSVDEDGSEENSEDDSGDSSEENETSDEDFEVEENS
EEDSDDSSEENETGDEDFEVDEVNEISDSDENSSLYVGYYNVNYYKKKCEISTKPLEEEE
IEKCSMKGSSSKVNEVSQKQDKKSVDSSSRAFVDENEKNIKEKSSLRQQHSVFMVEDIDK
DKDNGKANANDTTSPGDSGEAESLAVSLQNEKLAKHKIVENKGRGKRGGNRISNGKKKKI
MDDKSGQSKLKKELHKLLEEWEYYLGTKNTKQNGDSVVLEVKDDDGVNRQDTRPQDTIWS
LGKKVEEAAPKMEEEELWDEMDRVRREDEVESMIGNIGTNVASNKNMEDTFSLCNHDTRL
DEEIGVYCRLCDLVVTEIRYISEPVVDRYPNEGSGRRASIGGDDVSLFDWSHINVSDYDS
KTNFSHNEGTVWDKIPDVKQTLYPHQQEGFEFIWKNMAGSIELQNLKNADPRSEGGCIIS
HAPGTGKTRLTIVFLKAYLKVFPKCMPIIVAPASILLTWEEEFKKWDIGVPFHNLSSREL
SGKEHADAVNTFNMSNTRHGIEETRMAKLISWFKETSILGISYDLYGMKCKDTKKKKHES
VKERKRKCDMQKILLKAPGLLVLDEGHTPRNQRSHIWKVLSKIQTQKRIILSGTPFQNNF
WELYTTLSLVKPSFPDTIPPELKRFCHERRRKSSKQWSWEPVSANTTRNTSDDKIEKLKL
LMDPFVHVHKGAILENKLPGLRDCLVTLKAGSLQTEILKIIKRSQNTVFNFEHKIALTSV
HPSLLLECDLSEDEESVLNKDQLEKIRLNPYEGVKTKFLCELVRLCDSLNEKVLVFSQFH
APLQLIKDQLNSAFNWSNGEVLFMSSKDPPKDKQSIIHSFNDENSKAKILLAATKACSEG
ISLVGASRVVLLDVVWNPSVKRQAISRAYRIGQKKVVYIYQLLAEGTTEEEKYGKQAEKD
RLSELLFSAKTADNDGESKNYAVKFEDSVLDKMTRHGKLRDMFVECVVLRKERDLV
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagggttgctcagatgatgttaaaaatgaaaactttagcaatgtaaagtgtggt
ttcgaacgggaaaactctgttgatgaagatggaagtgaggaaaactctgaagatgattct
ggtgacagtagtgaagaaaatgaaaccagtgatgaagattttgaagttgaggaaaactct
gaagaagattctgatgatagtagtgaagaaaatgagactggtgatgaagattttgaagtt
gatgaggtgaatgaaatttctgacagtgatgaaaactcttctttatatgttggttattac
aatgtaaactattacaagaaaaaatgtgaaatttctaccaaaccattggaggaggaagag
attgagaagtgttcaatgaagggttcttcttcaaaggttaatgaagtttctcagaaacag
gataagaagagtgttgattcttcttcaagggcttttgtagatgaaaatgaaaagaatatt
aaggagaaatctagtttaagacaacaacatagtgtattcatggttgaagatatagacaaa
gacaaagacaatggtaaagctaatgctaatgacactacgagtcctggtgattcaggtgaa
gcagaatcactcgcagtgtcattacaaaatgaaaagttagctaaacacaaaattgtggag
aacaagggaaggggtaagagaggtggaaatagaattagtaatggtaagaagaagaaaatc
atggatgacaaaagtggtcaaagcaagttaaaaaaggagctgcacaaacttcttgaggaa
tgggagtactatttgggaaccaaaaacactaagcagaatggtgattcagttgtgttggag
gtgaaggatgatgatggtgttaaccggcaagatacgcgtccacaagatactatttggagt
cttggtaaaaaagttgaagaagcagcgccaaaaatggaggaagaagagttgtgggatgaa
atggatagagtgaggagagaagatgaagttgaatccatgattggcaatatagggaccaat
gtagcttctaacaaaaacatggaagatacattttcactatgtaaccatgacactcgtctc
gatgaggagattggagtatattgcaggttgtgtgatttggttgtcactgagatcagatat
atctcagagccggtggtggatagatatccgaatgaaggttcaggaagaagggcgtcaatc
ggtggagatgatgtttcactctttgattggtctcacatcaatgtttctgattatgactca
aagactaatttttctcacaatgaaggcactgtctgggacaaaattcctgatgtgaagcaa
accttataccctcaccaacaagaaggttttgagttcatctggaaaaacatggcaggaagc
atcgagcttcaaaatttaaagaatgctgatcctcgtagcgaaggtggctgcattatttct
catgctcctggaaccggaaagacaaggctgaccatagtgtttctcaaggcatatttgaaa
gtgtttccaaaatgcatgccaattattgtcgctcctgcaagtatactactaacatgggaa
gaggaattcaaaaaatgggacattggagttccatttcacaatttaagcagtcgggagtta
tctggtaaagagcatgctgatgcggttaacacattcaatatgtctaatacacggcatggt
attgaagaaactcgaatggcgaaactgatatcatggttcaaagaaacgagcattcttgga
atcagctacgacttgtatggaatgaaatgcaaagatacgaaaaagaaaaagcatgaaagt
gtgaaggagagaaaaaggaaatgtgatatgcaaaaaattctacttaaagctcctggtttg
ttagttttggatgaaggacacacaccaagaaatcaaagaagtcatatttggaaggtgcta
tcgaagattcaaacgcagaaacgaatcatcctttctggaactccattccagaacaatttc
tgggagctttacaccactttgagcttagtcaagccttcttttcctgacacgataccgcct
gagctaaaaagattttgccatgagcggagacgtaaatcatctaaacaatggagttgggaa
cctgtttcggccaacacaacaagaaacacttctgatgataagattgagaagttgaaattg
ctaatggatccctttgtgcatgttcacaaaggtgcgatccttgaaaataagcttcccggg
ttaagggactgtttggtgactttgaaggccggtagtttgcagactgaaatcctgaagata
attaaacgttctcagaacacagtatttaactttgagcataagattgcattgacatccgtc
catccatctcttttacttgaatgtgatctttcagaagacgaagaatctgtactcaacaag
gatcagctggaaaagataagactgaacccgtatgaaggtgtgaaaacaaaatttttgtgc
gagttagttcggctttgtgattctcttaacgagaaagttcttgtgttcagccaattccac
gctcctttacaattaattaaagaccaattaaactcggcttttaactggtctaacggagaa
gttctgttcatgtctagcaaagatcctccaaaggataagcagtccataatccatagcttc
aatgatgaaaatagcaaagcgaagattctacttgcagctacaaaagcttgttccgaggga
attagcttagttggagcttcaagggttgtgcttcttgatgttgtatggaatccttcagtc
aaaagacaggctatcagccgagcgtataggattggacagaagaaggtcgtatacatatac
cagcttctcgctgaagggactaccgaggaagaaaaatatggtaaacaggccgaaaaggat
cggttatctgagctccttttttcagctaaaaccgccgataatgatggtgagtccaagaat
tatgctgtgaaatttgaagatagtgttcttgataagatgactcggcatggaaagctcaga
gacatgtttgttgagtgcgtggtactgaggaaggagcgtgatttggtctga
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