Trifolium pratense (red clover): 123892420
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Entry
123892420 CDS
T08949
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123892420
Enzymes [BR:
tpra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
123892420
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
123892420
NCBI-ProteinID:
XP_045798159
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Position
LG6:complement(34490125..34492809)
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AA seq
451 aa
AA seq
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MAGFGSKIAFIFLVFAITIPCLEAGIAEFDDYLKEQAHLAHEIALKSYVPNPENITSDLN
LHVHKAMQEAMEEVSLNSTRRELIQARGGRGGHRGRRCLATNPIDRCWRCRRDWAQNRQL
LAKCGKGFGRKAVGGLGGKYYVVTDPSDNDMVNPKPGTLRFGVVQKGPLWIIFQRNMVIT
LKQELLVSSDKTIDGRGANVQIRDGAGITLQFVNNVIIHGLRIKNIKSRNGGMIRDSFDH
VGLRTRSDGDAISIYGSSNIWIDHLSLSNCEDGLVDVIYGSTAVTISNCHLTKHNDVMLF
GASDTFKDDKIMQITVAFNHFGQGLIQRMPRCRWGFVHVLNNDYTHWIMYAIGGSSGPTI
LSQGNRFIAPDNNAAKIVTHRDYASQDVWSKWQWTSQDDFFMNGAQFVQSGSPIKNLPFK
KGYLMKPRHGREANRLTRFAGALNCIVGRPC
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggctggatttggaagtaagattgcctttattttcttggtttttgccattactattcca
tgtcttgaggcaggtattgctgagtttgatgattatcttaaagaacaagcccatttagct
cacgaaattgctcttaagtcctatgtgcccaatcctgaaaacattacaagtgatctcaat
ctacatgttcacaaggcaatgcaagaggcaatggaagaggtgtctttaaatagcacaagg
agggaactaatacaagctagaggtggaagaggcggtcatcgcggtagaagatgcctagcc
accaatccaattgaccgttgttggaggtgtagaagagattgggcccaaaaccgtcaattg
ttagccaaatgtggaaaaggttttggtagaaaggccgtaggaggacttggtggtaagtac
tatgttgtcaccgatccatccgacaatgatatggtgaacccaaaacctggcactctccga
tttggtgtcgttcaaaagggaccactttggatcattttccaacgtaacatggttattaca
ttgaaacaagaattgttagtttcatctgacaagaccatcgatggtcgtggagccaatgtg
caaattagggacggcgctggtattactttgcagtttgtgaacaatgtcatcattcacggt
cttcgcataaagaacattaagtctaggaatggtggtatgattagagattcttttgatcac
gttggacttagaacaaggagcgatggcgatgctatctctatctatggttcatcaaacatc
tggattgatcatctttccttatctaactgtgaggatggtcttgttgatgttatttatggc
tctactgcagtcacaatatcaaattgccacttgaccaaacataatgatgtgatgttgttt
ggagctagtgatacatttaaagatgacaagataatgcaaattacagttgcattcaaccat
tttggacaaggattaatccaaagaatgccaaggtgtagatggggatttgtacatgttttg
aacaatgattacacacattggattatgtatgcaattggtggtagttcaggaccaacaatt
cttagtcaaggaaaccgtttcattgcacctgacaacaatgctgcaaaaatagttacacat
agagattatgcatcacaagatgtttggtcaaaatggcaatggacatcacaagatgatttt
ttcatgaatggtgctcaatttgttcaatctggttctcctattaagaatcttccattcaaa
aaaggatatttgatgaaaccaagacatggtagagaagctaataggcttacaaggtttgct
ggggcactcaattgcattgtgggcagaccttgctag
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