Trifolium pratense (red clover): 123898907
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Entry
123898907 CDS
T08949
Name
(RefSeq) exosome complex component RRP45A-like
KO
K03678
exosome complex component RRP45
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123898907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123898907
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
123898907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
123898907
NCBI-ProteinID:
XP_045805901
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All DBs
Position
LG7:complement(35514584..35518355)
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AA seq
450 aa
AA seq
DB search
MEQRLANCWRLTVNEKKFIESALLSDVRVDGRGPLDYRKLNIKFGKNDGSAEVQLGETRV
MSYVSAQLVQPYRDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRA
IDTESLCILSAKLVWAIRVDIHILDNAGNLVDAANIAALASLLTFRRPECSLGGEDGQQV
VVHPPEVREPLPLIIHHLPVAVTFGYFSNENLVVLDPTYHEEAVMTGRMTATLNANGDVC
AIQKPGGQEISHRVIMHCLRLAHVKAGDMTAKIKDAVEKHNTERALQKIKRHSSSVAVDV
CGTTASLGGKQNQSDGDKEGSRLDQLKLKDETKSMECDATSSAQVQSNKKDGSSKNFVGG
PSSWDPYSDCVNSDLLKASLASRGHSTPSKKKDSRRETKPEEPQNEVKIDSAPMDTALTS
GQSNEGKTLKDAVKPKHKRKKKKGSSNNAN
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggagcagagattagctaattgttggcggttgacagtcaatgaaaaaaaattcatcgaa
agtgctcttctatcagatgttcgagtggatggtcgtggccccttggattatcgcaagctg
aacattaaatttgggaagaatgatggctccgccgaggtccaattgggtgagacacgtgtg
atgagttatgtgagtgctcaacttgtgcagccttacagagataggcctaatgaaggcaca
ctttccatcttcactgagttctctcccatggctgatccttcctttgagcctggccgtcct
ggagaatcggccgtggagttaggacgaattatagaccgcggtttacgggaaagcagagcc
attgacactgaatctctctgcattctttctgccaagcttgtttgggccattcgcgttgat
atccatatactggacaatgcagggaatcttgttgatgctgcaaatattgctgcattggct
tctctgttgacattcagaaggcctgaatgctcgttggggggagaggatggtcaacaagtt
gtagtgcatcctcccgaggtgcgcgagccactccctttgattatacatcatcttccagtt
gctgtcacctttggatatttcagcaatgaaaatctcgtggtcttggatccgacataccat
gaagaggctgtaatgactggacgcatgactgcaactcttaatgcaaatggtgatgtttgc
gccattcaaaagcctggggggcaggaaatctctcatcgggttataatgcattgcttgaga
cttgctcatgtcaaagctggtgatatgacagccaagataaaggacgcggttgaaaagcac
aacactgaaagggcactgcagaagattaaacgccattcttcctctgttgccgtggatgta
tgtggaaccactgccagtttagggggaaaacaaaatcaatcagatggtgataaagaaggt
agtcgtctagaccaattgaagttgaaagacgagacaaagtctatggaatgtgatgccaca
tcatcagcacaagtacagagtaacaagaaggatggaagctcaaagaatttcgttggcggt
ccttcaagttgggatccctactcagactgtgtcaattcagatcttctaaaagcttctcta
gcttctcgtggacattcaactcctagtaaaaaaaaggattcaaggcgggagactaagcca
gaagaaccacagaacgaagtcaagatagattctgcaccgatggacacagctctaacttca
gggcagagtaatgaaggcaagactctaaaggatgctgtcaagcccaagcacaagaggaag
aagaaaaaaggatcttccaataatgcaaattaa
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