Trifolium pratense (red clover): 123900069
Help
Entry
123900069 CDS
T08949
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123900069
Enzymes [BR:
tpra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
123900069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
123900069
NCBI-ProteinID:
XP_045807323
LinkDB
All DBs
Position
LG7:complement(33409818..33411544)
Genome browser
AA seq
391 aa
AA seq
DB search
MVSQGTNFVLRHFILAIVIVIFFTPKLSYAKQSKLMGMKMNMIDNCWRPNPEWRRYRQQL
ATCSVGYVGKMINNIGNDLIYYKVTDPNDDPITPKPGTLRYGASVIQGKVWITFQKDMNI
KLMKPLLISSFTTIDGRGINVHIANNACLMIFKATNIIIHSIRIHHCKAQAPGMVMGPNG
KVIHLGSVDGDAIRLVTASKIWIDHNTLYKCEDGLLDVTRGSTDITISNNWFREQDKVML
LGHDDGYVRDNNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGGSMGPS
LKSEGNLFIAPKVGSKEVTWRKIGNTSGDKWEFHSVRDAFENGASFVVTKGGRVPKPNYS
KEQGFKVADVKYVKSLTRSSGAFQCSRTFIC
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atggtatctcagggtaccaatttcgtcctacggcattttattttggccattgtgattgta
atctttttcactccaaaacttagttatgccaaacaatccaagctaatgggcatgaaaatg
aatatgattgataattgttggagaccaaatcctgaatggaggagatatagacaacaacta
gcgacttgctctgtaggctatgttggaaagatgataaacaacattggtaacgacctcata
tattataaagttactgacccaaatgacgatcccataaccccgaaacctggtacgttgaga
tacggagcttctgtaattcaaggtaaagtgtggatcacatttcaaaaagacatgaacatt
aaactcatgaaaccccttctcattagtagtttcactaccattgatggtcgcggcatcaat
gtccacattgctaataatgcatgtttgatgatattcaaggccaccaacataatcattcat
agcattcgaattcatcactgcaaagctcaagcaccagggatggtgatggggcctaatgga
aaggtaattcatctaggttcagtagacggagatgcaattagattggtcacggcttcaaaa
atttggattgatcataatacactttataaatgtgaagatggtcttcttgatgttacaaga
ggttctactgatatcactatatccaataattggtttagagaacaagataaggttatgctt
cttggccatgatgatgggtatgtgagagacaacaacatgaaagtcactgttgtgtacaat
catttcggacctaactgcaaccaacggatgcctaggattcgccatggatatgcacatgta
gccaacaatctttacttagggtggatgcaatatgccattggtgggagtatggggcctagt
ctcaaaagtgagggtaacctcttcatagcaccaaaagtcggtagtaaagaggtaacatgg
agaaaaatcggtaatacaagtggagacaaatgggaatttcattccgtaagggacgcattt
gaaaatggagcctcctttgttgtaacaaaaggaggacgtgtgccaaagccgaattatagt
aaagaacaaggttttaaagttgctgatgttaaatatgttaagtcattgacaagatcatca
ggcgcattccaatgcagtaggacatttatatgttga
DBGET
integrated database retrieval system
