Trifolium pratense (red clover): 123902623
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Entry
123902623 CDS
T08949
Name
(RefSeq) probable pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123902623
Enzymes [BR:
tpra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
123902623
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Pec_lyase_N
Motif
Other DBs
NCBI-GeneID:
123902623
NCBI-ProteinID:
XP_045808351
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Position
LG1:complement(29087234..29092841)
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AA seq
449 aa
AA seq
DB search
MVVSTKFILNVCFMLLLFVLLVQEHTMASPQISQLSNVEIETHRLPSFNDSSMAAREKEA
EKLNERAAVANPQEVVSMVETHIQNSTERRNLGFFSCGTGNPIDDCWRCDANWQRNRKRL
ADCGIGFGRNAIGGRDGKYYVVTDSRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQL
KQELIVNSFKTIDGRGTNVHIANGGCITIQYVTNVIVHGLHIHDCVPTGNAMVRSSETHF
GWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLG
HSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTIN
SQGNRYNAPTNPFAKEVTKRVETPEGQWKGWNWRSEGDLYLNGAYFTASGAGASASYARA
SSLGAKSSAMVGTITSNAGALGCKRGRQC
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggtggtttctactaaattcattctcaatgtttgtttcatgctgttgctttttgtgttg
cttgttcaagaacataccatggcttcaccacagatctctcagcttagcaatgttgaaatt
gagacacacaggttaccaagctttaacgattcatcaatggcggcaagggaaaaagaggct
gagaaattgaatgagcgtgctgccgtggctaatccgcaagaggtggtttctatggttgag
acgcacattcagaacagcactgaaagaaggaatctcggatttttctcctgtggaaccggt
aaccctattgacgattgctggcgttgcgacgccaattggcaacgcaacaggaagcgtcta
gcagactgtggtattggtttcggtagaaacgccattggtggtcgtgatggaaagtactat
gttgtcactgactcaagagacgatgaccctgttaacccaagaccaggaactttgcgtcac
gctgtcatccaagataggccactttggattgtgttcaagagagacatggttattcagttg
aaacaagagcttattgtgaacagtttcaagacaattgatggaagaggaaccaatgttcat
attgctaatggaggatgcattacaattcagtatgttactaatgttatcgttcacggtctt
catattcatgattgtgtaccaactggtaatgctatggtgagaagctcagaaacacatttt
ggttggaggactatggctgatggtgatgctatttctatcttcggttcaagtcatatttgg
gttgatcataattctttatctcattgtgctgatggtcttgttgatgctgtcatgggatca
accgctataacaatttctaacaaccatttcactcaccacaatgaggtgatactgttgggc
cacagtgactcctacacaagagacaagcaaatgcaagtgacaatagcttataaccatttt
ggagaaggacttattcagagaatgccacgttgtagacatggatatttccatgtggtgaac
aatgactatactcattgggagatgtatgctattggtggaagtgctgaccctacaatcaac
agccagggtaacagatacaatgctcctactaacccttttgccaaagaggtaactaagaga
gttgaaacaccagaaggccaatggaaaggatggaattggaggtcagaaggagatttatat
ctcaatggtgcatacttcacagcatcaggtgctggagcttcagctagctatgcaagagcc
tcaagtttaggagcaaaatcttccgctatggttggaaccattacatcaaatgctggcgca
ctcggttgcaaaagaggtcgtcagtgctaa
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