Trifolium pratense (red clover): 123909775
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Entry
123909775 CDS
T08949
Name
(RefSeq) protein CHROMATIN REMODELING 25 isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123909775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123909775
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
123909775
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
SWI2_SNF2
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
123909775
NCBI-ProteinID:
XP_045816619
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All DBs
Position
LG2:complement(73726983..73735428)
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AA seq
923 aa
AA seq
DB search
MGKEEVVVLSSCSSDSGDDDDDDGYEVEERKSQNVKALISGNLILKRQSLLPRVLSTNGA
ASVCRKPFKPPSDASSYNSQQDLARRLSARKRFVPWGSTTPITPPIPITPLEDDKEEDKD
EVPLPPGIDPLILWQPPPPDEEPSNSNFTTISVDPLLVRFLRPHQREGVQFMFDCVAGLC
DTPDIYGCILADDMGLGKTLQSITLLYTLLSQGFQGNPMVRKAIIVTPTSLVSNWEAEIN
KWLGQRVRLIALCETTRQDVISGINSFTSPQSKLQVLIVSYETFRMHSSKFSSSDSCDLL
ICDEAHRLKNDQTITNKALAALPCKRRVLLSGTPLQNDLEEFFAMVNFTNPGILGGIAHF
RRYFEAPIICGREPAATAEEKKLGAERTAELSAKVNQFILRRTNALLSNHLPPKIIEVVC
CKLTPLQSDLYKHFIQSKNVKRAITEELKQSKILAYITALKKLCNHPKLIYDTIRSGSPG
TSGFEDCIRFFPPNMLSGRSGSWTGGHGGWVELSGKMQVLARLLAQLRQRTNDRIVLVSN
YTQTLDLFAQLCREQRYPHLRLDGATSISKRQKLVNCLNDPSKDEFVFLLSSKAGGCGLN
LIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGL
QKVIQREQSDSAVAQGNLLSTEDLRNLFTFEENVKSEIHEKMRCGRCQPYDGPQDTDVLS
TMINGECDDDDTSDIGGFAEIAGCLGNLKRSEKQVGNPLEEDLSSWGHHFFPTSVPDAIL
QAAAGDEVTFVFTNQVDGKLVPVDSIISPKPQKKELHQPRRNVERKSTPFALHNKLVPLR
SASSIAKVSCSSPIAWKKEATNCVRIAKNISTSVALNTKHSLVNEVSRQKRACPVDTNDG
HSPVNEVSQKKPCHVDNNDDDFE
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaagaggaagtggtggtgctgtcgtcgtgctcttctgattctggcgatgatgat
gatgatgatggttatgaagttgaagaacggaaatctcagaatgttaaagccctcataagt
ggtaacctgatattgaagagacaatcgttgcttccgcgagtattgtcgacaaatggagcg
gcttctgtttgcagaaaacctttcaaacctccatctgatgcttcttcttataacagtcag
caagaccttgctcgtagactctctgctcgcaaaaggtttgtcccatggggatctactact
cctattactcctcctattcctattacacctttggaggatgataaggaggaggataaggac
gaggttcctttgccccctggtattgatcctctaatactctggcaacctcctcctccggat
gaggaaccttctaattctaatttcactacaatatcagttgatcccttgcttgttcgtttc
cttcgtccacatcagagagaaggggttcaatttatgtttgactgtgtcgccggactatgt
gacacacccgacatctatggatgcattttggcagatgatatgggtttgggtaagacactg
cagtccatcacattactgtatactcttctttctcaaggcttccaggggaaccctatggtt
cgaaaggccatcattgtcactcctaccagcctcgtcagcaattgggaagctgaaatcaac
aagtggcttggacagagagttcgtcttattgctctttgtgaaaccactagacaagatgtt
atctctgggattaacagttttacaagtccccaaagcaaattacaggtgctcattgtttca
tatgagacattccgaatgcattcatcaaagtttagctctagcgactcgtgtgatctcctc
atatgtgatgaggctcacagactgaaaaatgatcagacaataacaaacaaggcattggct
gctctcccgtgcaaacgtagagttttgttgtcaggaactcctctgcagaatgacttagaa
gaattttttgcaatggttaactttactaatcctggaatattgggtggcattgcacatttt
cgacgttactttgaggcgccaataatttgcggaagagaacccgctgctactgcagaagag
aagaaactcggtgctgaacgcactgcagaattaagtgccaaagttaatcagttcatatta
agacggactaatgctttgttatcaaatcacttaccaccgaagataatcgaagttgtttgc
tgcaagttgactccgctacaatcagatctatataaacattttatacagtccaaaaatgtt
aaacgggcgattactgaagaactgaagcaatcaaagattttggcctacataacagctcta
aaaaagttatgcaatcatccaaagctcatctatgatacaatacgaagtgggagtccagga
acttcaggttttgaggactgcatccgattcttccctccaaatatgttatccggaaggtct
ggttcatggactggagggcatggaggctgggttgagctttccgggaaaatgcaagtcttg
gcaagattacttgctcaattacgtcaaagaacaaatgaccgcattgtccttgtctcaaac
tatactcagactcttgatctttttgctcaattgtgtcgggaacaaaggtaccctcacttg
aggcttgatggcgctacatcaatcagtaaacggcaaaagttggtcaactgcttgaatgac
ccatctaaggatgaatttgtttttctcttaagcagcaaggctggtggttgtggactcaat
ttgattggggcaaatcgactcgtcttgtttgatcctgattggaatccagcaaatgataaa
caagctgcagcaagagtgtggagggatggccagaagaaaagagtttatatttatagattt
ttgagtgccggaacaatagaagaaaaggtctaccagcgtcagatgtcaaaagaagggctg
caaaaggtcattcagagggagcaaagtgatagcgccgtggcacagggtaaccttctttca
acagaggatcttcgcaatttgtttacttttgaagagaatgtaaagtcagagattcatgaa
aagatgcgatgcggtcggtgccaaccatatgatgggcctcaagacactgatgtcttatct
acaatgattaatggtgaatgcgatgatgatgacacctctgatataggtggatttgctgaa
attgcaggctgcttagggaatttgaaaagatcagaaaagcaggtagggaatccattggaa
gaagatttaagtagttggggccatcattttttcccaacctctgtaccagatgctatcctt
caggctgcagctggcgatgaggtgacttttgtctttacaaaccaagttgatggaaagctg
gtaccggttgactccataatcagtcccaagccacagaaaaaggaattacaccagccaagg
aggaacgtcgagcgcaaatccaccccttttgctttacataataagttagtaccactacgt
tctgcatccagtattgccaaggtgtcatgctcatctccaattgcttggaagaaggaagca
acaaattgtgtaagaattgccaaaaatatctccacgagtgtagcattaaacaccaaacac
tctcttgtaaacgaagtatcaagacagaaaagagcatgccctgttgataccaatgatggg
cactctcctgtaaatgaagtatcacagaaaaaaccatgtcatgttgataacaatgatgat
gactttgagtaa
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