KEGG   Trifolium pratense (red clover): 123911244
Entry
123911244         CDS       T08949                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
tpra  Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:tpra04812]
    123911244
Cytoskeleton proteins [BR:tpra04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     123911244
SSDB
Motif
Pfam: Katanin_con80 Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40 WD40_Prp19 Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_WDHD1_1st WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st WDR55 EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_DCAF4 Beta-prop_SPT8 NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_IFT122_1st Beta-prop_TEP1_C WDR90_beta-prop_4th eIF2A Beta-prop_Vps41 Beta-prop_VPS8 Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_IP5PC_F Beta-prop_ACSF4 PilZN3
Other DBs
NCBI-GeneID: 123911244
NCBI-ProteinID: XP_045818574
LinkDB
Position
LG2:complement(28916206..28925812)
AA seq 1167 aa
MAKRGYKIQEFVAHSSNVNCLTIGKKGCRHFVTGGDDHKVNLWTIGKPASLSSLSGHTSP
VESVAFDSGEVLVLAGSSSGVIRLWDLEESKMVRTVAGHRSNCTSVEFHPFGEFFASGAM
DTNLKIWDNRKKGCIHTYKGHNQGISTIKFTPDGRWVVSGGHDNVVKVITDIYESIVVHL
TIDIICYNLCIYKLHDYLITNLQVWDLTAGKLLHDFNFHDGHITSLNFHPLEFLLATGSA
DKTVKFWDLETFELIGSARREATGVRSIAFHPDGRTLFSGHEDGLKVFSWEPVICHDTVD
MGWTTLGDLCIHDGKLLGCSYYRNSVGVWVADISLIEPYGDGLDLKKDVGTEQKDSLKGS
KLEKVKVDAGPTSGFRSISPDESKEIKNIYIDSSGGKPVALQRSASFNSAKVDMIEESKE
ICNSETMKQNPATKVQVKSNEQATKKSLIVPRDIADAKDFAKPVKETITFSKTKPGMLLK
PAHVRRASTGRFDMDKFSNANSGTFCDSASKLHSTKDPKLQGDLGSQNEVKESCEDKHPI
TDKSDKTVSPYKFFNLTKRVESSTSNEEIAPVKYVNGVAVVRGRTRSLVERFERRESVQV
NEDQINPPLPTINEAAGNIHNEDQTNSYPSTEFERKEIIPRNEDQTDEFPSTVFERKERI
PRNEDQTIATPSVVFERKERIPRNEDQKDESLSTVFERKERIPRNEVQTNVYPATVFERK
EKIPRDEDLTNESSSALFKRTERIPSIEVQTNAYPTAVFDRKEKIPRDENLTNESPSTVF
QKKEKIPRDEAQTNTHPTMVSERKERIPRNEDQTSASPSTVFERKERIPRSEVQTNASRS
SVFERKERIPRSEVQTNVSPSMAFVRKERIARSEVQTNASHSMVLERKERIPRSEVQTNT
SHSMVFERKERIPRNEVQTNAPPSTAFERRERILRNEVQTNASSTVFERKGRIPRNEDRN
NMPSIPNSISDIDESPSPNILKVEPQVSQRDSNSPNEMTIIEGLMETHDATLSNLRSRLT
KLQVVRHFWERNDIKGAINALRKLPDQSVQADVISVLMEKMEILTLDLLSSLLPVLTGLL
DSKTERHVKVSLDMLLKFVAVFGSTINATISAPPSVGVDLHREERRECCNACFMELQKVQ
TILPLLIRRGGLLAKSSMELNLVLQRS
NT seq 3504 nt   +upstreamnt  +downstreamnt
atggcaaagcgtggatataaaatacaggaatttgtggctcattcaagcaatgtcaattgt
ttgactattggaaagaagggatgtcgtcatttcgttacaggaggagatgatcataaggtc
aatctatggactattggcaaaccagcttcattatcgagtttgtctggtcatactagtccg
gtcgaatccgttgcatttgattcgggagaagtgttagttcttgctggatcatcatcgggt
gtgataagactttgggatttggaagaatcgaagatggttcgcactgttgccgggcacaga
tccaattgtacatctgttgagtttcatccatttggtgagttttttgcatctggtgccatg
gacactaatctaaagatttgggacaaccggaaaaaaggatgtattcatacatacaagggt
cataaccagggcatcagcactatcaaatttactcctgatggtcgttgggtagtatccggc
ggacatgataatgttgtaaaggtaattacagacatctatgaatccattgtagtacacctt
acaattgatattatttgttacaatttgtgtatctataaactgcatgactaccttatcact
aatttacaggtatgggatctaactgccggaaagctcttgcatgatttcaatttccatgac
ggacacattacgtccttaaatttccatccgctagagtttcttctggctacaggttcagca
gataaaacggtgaaattctgggatttagaaacctttgaactgattggatctgctaggcgt
gaggccacaggagtacgctccattgcttttcatcctgatggaaggaccctatttagcgga
catgaagatggtttgaaggtgttttcttgggaacccgttatttgtcatgacactgttgat
atgggatggacaacactcggtgatctctgcattcatgatggcaaacttttagggtgctca
tactaccgaaattctgttggagtttgggtagcagatatatcgcttattgagccatatgga
gatggcttggatctcaagaaagatgtaggcacagagcagaaagacagtcttaagggaagt
aaactggaaaaagtaaaggttgatgcaggaccaacttctgggtttcgcagcatttctcct
gatgagtcgaaagagataaagaatatatatatcgactcttctggtgggaagcctgttgct
ttacagagatcagcatcttttaattctgcaaaagtagatatgatcgaggaatccaaagaa
atttgtaactcggaaacaatgaagcagaatcctgcaacaaaagttcaagtaaaatcaaat
gaacaagcaacgaaaaaatctctcattgtaccgagggacattgctgatgctaaggacttc
gcaaaacctgtaaaagagaccatcaccttttcaaagacaaaacccgggatgctacttaaa
ccagctcatgtacgaagagcatccacaggcagatttgatatggataagttttcaaatgcg
aactctggaactttttgtgacagtgcaagtaaattacacagtacgaaagatcctaagtta
caaggtgatcttggatctcagaatgaagtcaaagaatcttgtgaagataaacatcctatc
acagacaagtctgacaaaactgtatctccatacaaattttttaatctgacaaaacgtgtt
gagtcctctacttccaacgaagaaattgctccagtcaaatatgtcaatggagtagctgtt
gtacgaggaaggacccgttctctggttgagagatttgaaagaagagaaagtgttcaagtc
aatgaagatcaaattaatccacccctccccacaattaatgaagcagctggaaatattcat
aatgaagatcaaactaattcatacccctccacggaatttgagaggaaagaaataattccc
cgcaatgaagatcaaacggatgagttcccctccacagtatttgagaggaaagaaagaatt
ccccgcaacgaagatcaaactattgcaaccccctccgtggtatttgagaggaaagaaaga
attcctcgcaatgaagatcaaaaggatgagtccctctccacggtatttgagaggaaagaa
agaattccccgcaatgaagttcaaacaaatgtgtaccccgcgacggtatttgaaaggaaa
gaaaaaattccccgcgatgaagatctaactaatgaatcctcctctgcgttatttaagagg
acagaaagaattcccagcattgaagttcaaactaatgcataccccacggcggtatttgat
aggaaagaaaagattccccgcgacgaaaatctaactaatgaatccccctccacagtattt
cagaagaaagaaaaaattccccgcgatgaagctcaaactaatacacaccccaccatggta
tctgagaggaaagaaagaattcctcggaatgaagatcaaacaagtgcatcaccctccacg
gtatttgagagaaaagaaagaataccccgtagtgaagttcaaactaatgcatcccgctct
tcggtatttgagaggaaagaaagaattccccgcagtgaagttcaaactaatgtctccccc
tctatggcatttgtgaggaaagaaagaatcgcccgcagtgaagttcaaactaatgcatcc
cactctatggtgcttgagaggaaagaaagaattccccgcagtgaagttcaaactaataca
tcccactctatggtgtttgaaaggaaagaaagaattccccgcaatgaagttcaaactaat
gcacccccatccacggcatttgagaggagagaaagaattctccgcaatgaagttcaaact
aatgcatcctccacggtatttgagaggaaaggaagaattccccgcaatgaagatcgaaac
aatatgccctccattcctaactcaatatctgacattgatgaatctcccagtcccaacata
ctgaaagttgaacctcaagtttctcaaagggattcaaactctccaaatgaaatgacaata
attgaaggtctgatggaaacccatgatgcaacattaagtaatctccgttcacgcttgaca
aaattacaggtggtgcggcatttttgggaacggaatgatatcaaaggtgctatcaatgct
ttaagaaagctgccagatcaatccgttcaagcagatgttattagtgttcttatggaaaag
atggagattcttacattggatttactttcttccttacttcctgtgctcacaggtttgctg
gatagcaagacagaaagacatgtaaaggtgtcactagatatgttgttaaagtttgtggca
gtttttggttcaacaataaatgcaaccatttcagcacctccctctgttggggttgatctg
catcgagaggaaaggagggaatgttgcaacgcttgctttatggaactgcaaaaagtccaa
accattcttccattgctgatacggaggggtggtttattggccaaatcgtccatggagcta
aatcttgttcttcaacgatcataa

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