Trifolium pratense (red clover): 123924098
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Entry
123924098 CDS
T08949
Name
(RefSeq) SNF2 domain-containing protein CLASSY 2-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123924098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123924098
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
123924098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
123924098
NCBI-ProteinID:
XP_045832821
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Position
LG4:24821845..24833867
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AA seq
1300 aa
AA seq
DB search
MNRKRRLNQSTTAIDSHPFEAVTFGSWHPVEFIKVKSGTVTIHFADNHHMVMDKGTLSDI
RMRSRKTTVSDCSCFLRPGIDICVLSPPQRAKDAVGSNLEPVWMDARISSIQRKPHGAEC
SCQFFVNFYVDQGSLGLEMRTLCKDIKVFRLNQISILQRIEHSPCENKPYRWSSSEDCSS
LPHTKLLLGKFLCDLSWLIATSVLMKVAFCARSVENKMVYQVLGGDNSIGSSSNTESHID
VIGFKNDNGMLVPIASQVAITNTKKVDQAQESHTDEASPSYNVDGLRRSKRRHVQPDRYL
GCEVKELDVGSFRNRPPVRIDTSTKEDDLPLSCLFRLQQQKSPEKITDKSQKINLPNPCR
ELLVYNRRAKNREVKKFSDVDHNEHQNPLAIIPFTNQDADPIAVEPSDQNSNVAKSGESS
EISSKYRHLINTPKPRKNINLLDIPENSEDAAKSDDVSSRCQFFGTPKLQKKSLGDLDAM
DLGNRWEGIKRKTNKGFKEGKYRSTYLRNPGEGGTHRYKDRTLNASAYKNLINSYLSNIN
TTIPVEETPITDQWKKCNTTNVAGQNEETDASHEEYEKEKAEEDMLWKELEVGLASIYFD
DSEVSNANASAEAEEKLKEVCEHDNRLDEEIGIYCIRCGFVTTHIRDVNPIFVEKAVWRQ
DEKPCDGGEDKEEPTADEDDDFHFFPTDANPEEPISEENQSVWSLIPELKEKLHVHQKKA
FEFLWQNIAGSSNPALIEAESKKRGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVL
APKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFKQNSVAVLPGVPKPTDDVKHVLDCLE
KIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKFMAKVLRESPQLLVLDEGHNPRSTKSR
LRKCLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPTFAYEVLKALDPKYKKKKKGVAG
KGAEKAQYLIESRARKFFLDTIAKKIDSNVGDERLQGLNMLRNVTNGFIDVYEGGSSDDL
PGLQIYTLLMNTTDIQHEILKKLHSDMAKCSGYPLELELLITLGSIHPWLVKTAVCSQKF
LTKEQLSDLDKYKFDLKIGSKVRFVLSLIYRVVKNEKVLIFCHNIAPVKLFQEYFEKFFG
WQKGREVLVLTGELELFERGKIMDKFEEPGSVSKILLASITACAEGISLTAASRVIMLDS
EWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVED
PSRWQAEKIEDDILREMVEEDKSKSFHMIMKNEKASTNNR
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgaacagaaaaaggcgtctaaatcaatcgaccactgcaatcgattctcaccccttcgaa
gcagttacctttggctcatggcatccggtggagttcataaaagttaagtcgggaactgta
accatacattttgcagataatcaccatatggttatggacaaaggtactttatcagacatt
cgtatgaggtcaaggaaaactacagtgtcagattgctcttgtttcttacgtcctggaatc
gacatctgcgtgctatcaccccctcaacgagccaaggatgcagttggttcaaatctcgag
cccgtttggatggatgctagaataagttctatacagagaaagcctcatggcgcagagtgc
tcgtgtcagtttttcgtcaatttctatgttgatcaaggttcacttggtttagagatgaga
actctttgtaaggatatcaaagtattcagactcaatcagatctccatcctccaaagaatt
gaacatagtccttgtgaaaataagccctaccgttggtcttcatccgaagattgctcttcg
ttgccacacactaaattgcttttgggaaaatttttatgcgatctttcatggttaattgct
acatcggttctcatgaaagttgcgttctgtgcaagatctgttgaaaacaagatggtgtat
caagttttgggaggtgataatagtattggctcttcgtcgaacactgagtctcatattgat
gttattggtttcaaaaacgataatggcatgttagtaccgattgcttctcaagttgctata
actaacaccaagaaagttgaccaagcacaagaatcccatacagatgaagcgtcgccgtct
tataatgttgacggcttacgacgctccaaacgccggcatgtacagccggatcgttacctt
ggctgtgaagttaaagaattggatgttggttcctttagaaacaggccaccggttaggata
gatacatccaccaaagaagatgacttgccgttatcgtgcttgtttcgtttgcagcaacag
aagagtccagaaaagatcaccgacaaatctcagaagatcaacctaccgaatccctgccgg
gagcttctagtgtacaacaggagggctaaaaatcgagaggtgaagaagtttagtgatgtt
gatcataatgaacatcaaaatccacttgctattatcccttttactaatcaagatgctgat
ccaatagctgttgagcctagcgatcaaaacagcaatgttgctaaaagtggtgaatcatct
gaaatttcttcaaaatatcgtcatttgattaatactcctaaaccaaggaaaaacattaat
ttgttagatattcctgaaaattcagaagatgctgcgaagagcgacgatgtttcttcaaga
tgtcaattttttggaacccctaagttacaaaagaagagtttaggtgatttggacgctatg
gatcttggaaatagatgggaagggataaaaaggaaaaccaataaaggatttaaggaggga
aaatatcgttcaacgtatttaagaaatcccggcgaaggaggaactcacagatataaagat
agaacattaaatgcatctgcatacaagaatttgataaattcatatttatcgaatattaat
acaacaataccggtcgaagaaacccctattactgaccagtggaagaaatgtaacacaaca
aatgttgctggacaaaatgaggagacggatgcttctcatgaagaatatgagaaagaaaaa
gctgaagaggatatgttgtggaaagaacttgaagtcggactggcatcaatttatttcgat
gactcggaggtttcaaatgcaaacgcttctgccgaggctgaggaaaagttgaaagaagtt
tgtgaacatgataatagattggatgaagaaattggaatatactgcattagatgtggcttt
gtgaccactcatatcagagatgttaatccaatctttgttgaaaaggcagtgtggcgccaa
gatgagaagccttgtgatggaggagaagataaagaagagcccacggctgatgaagatgat
gatttccattttttcccaactgatgctaatcctgaagaaccaatatcggaagaaaaccaa
agtgtttggtcattaattcctgaactcaaagaaaagttgcatgtgcaccaaaagaaagct
tttgagtttctttggcaaaacattgcagggtcatcaaatccagcactaattgaagcagaa
tcgaaaaaaagaggtggttgtgtgatatctcatactcctggagccggaaaaacttttctc
atcattgcttttcttgttagctacttgaagttattccctgggaagaggcctctagttctt
gctccgaaaactacgctctatacttggtataaagaatttatcaagtgggagattcctata
ccggtgtacttgattcacggtcgtagaacctatagggtgttcaagcagaattcagttgca
gttcttcctggagttcctaagcctaccgatgatgtcaaacatgttttggattgccttgag
aagatacaaaaatggcattcacatccgagtgttctaatcatgggctacacttcgttttta
acattgatgcgagaggattcgaagtttgctcacagaaagtttatggcaaaagtgttgagg
gaaagtcctcaactcttggtacttgatgaaggtcacaatcctagaagcactaaatcaagg
ttgcgaaaatgtttgatgaaagtgcaaaccgaattgagaatattactttctggtactttg
tttcaaaataatttctgtgaatacttcaacactctatgcttggcaagaccaacatttgct
tacgaagtgttgaaagcattagaccctaaatacaagaagaaaaagaaaggagtagcagga
aaaggagcagaaaaagcacaatatttgatcgagtcaagggctagaaaattcttcttagat
acaatcgctaagaaaattgactcaaatgttggtgatgaaaggctgcaaggcttaaacatg
ttgagaaatgtgacaaatggttttattgatgtttatgaaggtggaagttctgatgattta
cctggtttacaaatttatacattgctaatgaacacaaccgatatacagcatgagattctg
aagaaacttcacagcgacatggctaaatgcagtggttaccctctcgagttagagcttttg
ataactctcggatcgatacatccttggttggtcaaaaccgcggtatgttctcagaaattt
ttaacaaaggagcaattgagtgatctagataagtacaagtttgatttgaaaattggttca
aaagtaagatttgttttgagccttatctaccgtgttgtcaagaacgaaaaggttcttatc
ttttgccacaacattgctcctgtgaaattatttcaagaatattttgagaagttctttgga
tggcaaaaaggccgcgaagttttagtactaaccggggaactcgagctcttcgaacgtggg
aaaataatggataaatttgaggaacccggtagtgtatctaagatactacttgcttcaatt
acagcctgtgctgaaggcattagtttgacagcagcgtctcgtgtgattatgttggattca
gagtggaacccttcgaaaacaaagcaagctattgcacgtgcgtttcgtcccggacagcag
aaaatggtttatgtttatcagctcttggtgacaggttcattggaggaagataaatatcga
agaaccacatggaaagagtgggtgtcgagtatgattttcagcgaggcgtttgtcgaggat
ccttctcgttggcaagctgagaagatcgaagatgatattctaagagaaatggtcgaggag
gataagtctaaatcatttcatatgattatgaagaatgaaaaagcttcaacaaacaacaga
taa
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