Trifolium pratense (red clover): 123924768
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Entry
123924768 CDS
T08949
Name
(RefSeq) exosome complex component RRP42-like
KO
K12589
exosome complex component RRP42
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123924768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123924768
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
123924768
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
123924768
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
123924768
NCBI-ProteinID:
XP_045833692
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Position
LG4:complement(48803327..48807676)
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AA seq
286 aa
AA seq
DB search
MVGLSLGEQCFIEGGIAQDLRCDGRRRLTYRPIHVETGVIPQANGSARVRIGATEVIVSV
KAELGKPSLMQPDKGNVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGA
GIDRSSLVVIEGKICWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVQIAAGASSD
EQPEVDVSDEEFMQFDTSGVPVIITLTKIGKHYIVDATPEEESQMSSAVSISINRQGHVC
GVTKRGGVGIDPTVILQMVSAAKHVSEQLINKLDSEIASAEAEDES
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggtaggtttatctctaggagaacaatgttttatagaaggtggcattgctcaagatctt
cgttgtgatggtagaagaagattgacttatagacctatccatgttgaaactggagtcatt
cctcaggcaaatggttcggcaagagtcagaattggtgctactgaagtcattgtcagtgtg
aaggctgaacttggaaaaccaagcttaatgcaacctgacaaagggaatgtctcgatatat
attgattgtagttcaactgcagagccagcttttgagggtcgaggggccgattggttgtca
gcagatctgtcaaatgctcttcagcgctgtctcttgggtgctaaaagtggagcaggtgct
ggaattgatcgctcctcacttgttgttatcgaagggaaaatttgttgggatctttatatt
gacggacttgttattagttctgatgggaatttgttagacgctttaggcgctgccatcaag
gctgctttaagcaataccggtattccaaaagttcaaattgctgctggtgcatcaagtgac
gagcaaccagaagttgatgtaagtgacgaggagtttatgcagtttgacacatctggagtc
cctgttataattacactgactaagattgggaagcactatattgtggatgccacacctgaa
gaggaatcacaaatgagctctgcagtttctatctctattaataggcaagggcatgtgtgt
ggtgtaaccaaacgaggaggtgtggggattgatcctactgtaattcttcaaatggtatct
gccgctaaacatgtaagcgagcagttaataaataaattggattcagaaatagcttctgct
gaagctgaagacgagtcttga
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