Trichogramma pretiosum: 106648950
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Entry
106648950 CDS
T07644
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tpre
Trichogramma pretiosum
Pathway
tpre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106648950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpre03019
]
106648950
Messenger RNA biogenesis [BR:
tpre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106648950
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106648950
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
PAT1
eIF-3_zeta
DDHD
V_ATPase_I
Otopetrin
Lin-8
Motif
Other DBs
NCBI-GeneID:
106648950
NCBI-ProteinID:
XP_014221644
LinkDB
All DBs
Position
Unknown
AA seq
2459 aa
AA seq
DB search
MNLDSLSFTLAQISHLVSGLTKKNYCDSCEEIALLVRWKGLEVDRHLLRCLFLIIDFSTG
EPPEPSSKHYYQVQLLKQECKTLLGKPSFVSNLCFAIDFTFPLPNTTVPIQKFFQYIRKV
LGLSLLQDTVFALALKHSKTTEIATRAIDHLKHQLPELIRNYINAESSKKHISEEGLHDT
SPEILHLILSFVFEESTTVELSSEIKEKFLKNLKRDFPRELVPVVLAPLLYPGDGEDTQK
IIEVNMAGNQMDNANLVEMIMELGYSFTSNVDECRNNLVSLGARDMSARSVAKILSHMAR
TCSGLDDAAGLHSFWDGSAQSQENKDKQATDPPITWNVDVFIQAIKEMCPKLAWNEVIAK
LDHPEFCIKDRQGLNLLISGLKLGMKIQGYPLDVFPVELFYRHWDNFKGQFTLIQQILKN
PDVFSFADYAYHPVQIEQLKLTENESKEHLTWRSLNVVEVLLFLGDRLSSSNLVQDIFKW
PMSNCPDVLAMALIQSNQPITALRQELLANLIPTFLNNHPNSSVIFHFAWCTNNLKIKGI
FMQAMAEWYLRSDNDQARLLRILDIAQDLKALQTFLSIQSFPFVIDLACLASRRECLKLE
KWLSDKIRDHGEAFVTACIKYLQRRCPQLMGPTKEDPNVSRINQLPQETLSTMLNCLQNC
IGTVSQECADAIVQMVQNFNITYNKGSIIRMPPPAMRHRNVDALSGQLFTNKSADNVTSL
NSSLASMNITSNLGPPTNTGFNLQGGLGPLVSPGSPSRLMGVGPSASPFPMVPISSQLHT
GPVGTQGSAVLPGNIPVGTMNRIPQPAVATDKSRMAQQEYSADLNQPMPKEIEDEANGYF
QRIYNHPPHPTLSIDEVLDMLKKFQDSNIKRERDVYTCMLRNLFEEYKFFPQYPEKELHI
TAQLFGGIIERSLVNSYVSLGMALRFVLDSLRKKEDTKMYYFGLAALDRFKSKLKEYSTY
CIHVRNIPHFVEFPDHLIEYVEYGLQSQEPPTRPQGPIVPKSSNVLGSGTVTTPFKTITT
TTVTTTTTQTKPSTTPTSALGTGRPSIANATNIDTLLVATDKEEKITSPPESLQDKTAFI
FNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDCLKIPEVN
KMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILTVDIDLKSLLI
EAYCKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEQDLKLNLKFE
IEVLCKNLNIDVAELKPAIFLKDPERARNIEYQLSQPPKKNENINNANNQQQTNEANNQS
ATIIHQQQQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQHQQQQQQQ
QQQQVQQVPSVANTTPSLPSVPIEPRFSLNDINTSNIGNIQSQITINSSLQIFQTHPHLK
QFVRQAVERAIQEWIHPVVDRSIKIAITTTEQTVRKDFAMDGDESKMRTAAKSMVRNLTA
GMAMITCRDQILGSISTNLKSAFNMIGLTQQQKELADQAANVVATDNMELACAFIQKTAI
EKAIPEMDKRLMPEYDARKVAKSEGRRFTNPISNFQNDRLPEPLKLKSTGVTPQQMAVYE
EFARNIPGFLPMTSDRERDISLYIPKSIVEITPVQPVQPFAASTVPTMPVLNAQVYPSTV
SNDEVGAMLEKLASEVEVMITTLNSTSPQQNTSLHGLLEAIIVTRRSRDATAAMTMLKKA
VDNLIDGPPLTNNLMDSETVMRYRDLHLRVLKCLQDPRAYGLQWTNKNVTRCLTESREDF
RYNFEAVDLLIRSHLIILGQYDVALAQAVEAGNALATAFAIQLIQLYLIDERQTIHVTES
DLFHTIEVLARMALHRSAPEGIPLFRLNSLIESLRINHDPAVLTDRAPAGPTAHIHSGIL
QVRQAREYEDPPGLMEKTEYLLREWVNMFHNPQYARDPTKAFGVFVHQMNIHGILKTDDL
ITRFFKLSTQMCVDHCYRALSETSSAPSIVRAKCFHTLDAFVRLVALLVKHSGDSTNTHT
KINLLNKVLGIVAGVLLQDHELRSTDFQQCPYHRIFIMLFLELCAPEPVLEAVNYQVLTA
FCHTFHILRPAKAPGFCYAWLELVSHRVFIGRMLAITPQQRCWGIYAQLLIDLFKYLAPY
LRNAELAKPVTLLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILSAFPR
NMRLPDPFTPNLKVDMLQEITHAPRVLTNFASMIQPITFKKELDVYLKTRAPVTFLGDLR
TNLQQGQGLGMRYNIQLMNALVIYVGTQAINFIRSKGHAPSMSTIAHSSHMDIFQNLAVD
LDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERLIVNRP
HPWGLLITFIELIKNPNYKFWQHEFVHCAQEIEKLFESVARSCMVQKQVQPTPEPEIPE
NT seq
7380 nt
NT seq
+upstream
nt +downstream
nt
atgaatttggactcgttgtcttttacgttagctcaaatttctcatcttgtttccggactt
actaagaaaaactattgtgatagctgcgaggagatagcgcttttggtgcggtggaaaggt
ctggaggtagatagacatttgctgcgctgtttgtttctaattattgacttttccactgga
gaacctcctgaacctagctcaaaacattattatcaagtacaactactgaagcaagagtgc
aaaactctgttaggcaaaccatcttttgtatccaatctttgctttgccattgatttcaca
tttcctctgcccaatactactgtgccaattcaaaaattttttcagtacattcgtaaagta
ctaggattatcattattgcaggatactgtgtttgcattagctttgaaacattccaaaact
actgaaatagccactcgtgctattgatcatttaaagcatcaattaccggaactgataaga
aattacataaacgctgaaagtagtaaaaaacacattagcgaagaaggtctgcacgatact
tctcctgaaatcttgcatcttatccttagttttgtgttcgaggagtcaactacggttgaa
ctctcctcggaaattaaagaaaaatttttgaaaaatctgaaacgtgacttcccacgtgag
ctggtacctgtggtcttggcaccactactgtacccaggtgacggggaggacactcaaaaa
attattgaagtaaacatggcaggaaatcaaatggataatgcaaacttggtagagatgata
atggagctgggctacagttttaccagcaatgttgacgaatgtcgcaacaatctcgttagt
ctcggtgcacgagatatgtcagctcgttctgtagccaaaattttgtctcacatggcacgt
acttgcagtggcctagatgacgcggctggattacatagtttttgggatggctcagctcaa
tctcaagaaaataaagataaacaagccactgatccgcctatcacatggaatgttgatgta
ttcattcaagctattaaagaaatgtgtccaaaactagcatggaatgaagtgatagcaaaa
ttagatcatccagaattctgtatcaaagatcgccaaggactcaatctattaatcagtggt
cttaaattaggcatgaaaatccaaggttacccactagatgtttttccagtggaattattt
tatagacactgggataattttaaaggtcaatttactctaatccagcaaatattaaaaaat
ccagatgtgtttagttttgccgattatgcttaccatccagttcaaattgaacaactgaaa
ttaacagaaaacgaaagtaaagagcacctcacatggagatctttgaatgttgtcgaagta
ctattatttttgggagaccgcctgagttcaagtaatttggtacaagatattttcaaatgg
cctatgtccaattgtccagatgtacttgcaatggcattaattcaatcaaatcaacccatt
actgctttgagacaagaacttttggcgaacttgataccgacttttcttaataatcatcca
aatagtagtgtaatttttcattttgcttggtgcacaaacaatttaaaaatcaaaggaatt
tttatgcaagcaatggctgaatggtatttacgtagcgataacgatcaggctcgtttgcta
cgtatcttggatattgcccaagatctcaaagctctgcaaacttttttaagcattcaatct
tttcccttcgttattgatctcgcatgtttagcatcacggcgggagtgcctcaaacttgaa
aaatggctatctgataaaattagagaccacggagaggcatttgttactgcctgcataaaa
tatttacaaagaaggtgtcctcaattaatgggtcccacgaaagaagatcccaatgtatca
agaatcaatcaattacctcaagagacgcttagcactatgctaaattgtctacaaaattgc
attggaactgtatcacaagagtgtgctgatgctatagtacagatggtacaaaatttcaat
ataacttataataaaggatctattattcgaatgcctcctcctgctatgaggcacagaaat
gtagatgcattatcgggacagttgttcacaaataaatcggctgataatgttacatcactg
aattctagtttagcatccatgaatataacttcaaacttgggtccaccaaccaatactgga
tttaatcttcaagggggtttaggtcccttggtgtctccaggttctccttcaagactgatg
ggagttggtccatctgcctcgccttttcccatggtgccaatttcatcacaattacacact
gggcctgtaggtacgcaaggctccgctgttttgccaggaaacattcctgtgggtaccatg
aatcgcattcctcaacctgcggtggctactgataagtctcgaatggcacagcaagaatat
tcagctgatttgaatcaacccatgccaaaagaaatagaagatgaagcaaatggatacttt
caaaggatttataatcacccacctcatccaaccttatctattgatgaagtacttgacatg
cttaaaaagtttcaagattcgaacatcaaaagagaaagagatgtttacacgtgcatgcta
cgaaatctttttgaggaatataaattttttcctcagtatcccgaaaaagagttgcacata
acagctcaactttttggaggcataatcgaacgaagccttgtcaacagttatgttagttta
ggaatggcattgagatttgtcctagactcccttcgtaaaaaagaagatacaaagatgtat
tactttggtttagctgcgctagatcgtttcaaatctaaattaaaggagtattcaacgtat
tgtattcacgtgcgcaatatcccgcactttgttgaatttcctgaccatttgatcgaatat
gtagaatatggacttcaatctcaagaaccaccaacgcgtccacaaggtccaatagtacca
aagtcaagtaatgttcttggttccggtacagtaaccacaccattcaaaaccattaccaca
actactgtcacaaccaccacgactcaaactaaaccatcaaccacacctacgagtgctttg
ggcacgggtcgacctagtatagcaaacgccacaaacattgatactttgcttgtagccaca
gataaagaagagaaaataaccagtccacctgaatcactgcaagataaaaccgcctttata
ttcaacaatttaagccagttaaatctgcaacaaaaatgtgacgagattagagaaattgta
acggaagagtattggccatggatggcccagtatctggttatgaagagagccagtattgag
ctaaatttccacgctttgtattcgaactttttggattgtttaaagataccggaagttaac
aaaatggtcacacgagagacctttagaaacatcaaagttcttttacgaagtgacaaaggc
atagccaatttctctgaccgttctttattaaagaatcttggtcactggttgggcatgctt
acattaggtcgtaacaagccgattttaacagttgatattgatcttaaaagcttacttatt
gaagcttactgcaaaggtcagcaagaattattgtatgttgtgccttttgtggccaaagtt
ttggaaagttgtgctaaaagtcgtgtctttcgtcctcctaacccgtggaccatggcaata
atgaatgttcttgcggaacttcatcaagagcaagatcttaagttaaatcttaaatttgag
attgaagttttgtgtaaaaatttgaatatcgatgtggcagaactaaaaccggcaatattt
ttgaaagatcctgaaagagctcgcaatattgagtatcaactatcgcagcctcctaaaaag
aatgagaatatcaataatgctaataatcaacagcaaaccaatgaagccaacaatcaatct
gctacgataattcaccagcagcagcaacttcaacaacaacaacagcagcagcaacaacaa
caacaacaacaacaacaacaacaacaacaacaacaacagcaacagcaacaacaacagcaa
caacaacagcagcaacaccaacagcagcagcaacaacaccaacaacagcagcagcagcaa
caacagcaacaggtgcagcaagtaccctctgttgccaataccacaccttcacttccaagt
gtaccaattgaaccacgattcagtttaaatgatataaacacgtcaaatattggaaatatc
caatcgcaaataacaattaacagcagtttacaaatattccaaactcaccctcacctgaaa
cagtttgttcgtcaagctgttgaacgtgccattcaagaatggatacatccagttgtcgac
cgctctatcaaaattgccataacaacaacagagcaaactgtaagaaaagattttgcaatg
gacggtgatgaatcaaaaatgcgtaccgctgccaaaagcatggttcgcaatcttactgct
ggaatggctatgataacatgtcgagatcagatccttggatcaattagtaccaatttgaaa
agtgcatttaatatgattgggttgacacaacaacaaaaggaattagcagatcaagcagcc
aacgtagttgctactgataatatggaattagcttgtgcttttatccaaaagacggccatc
gaaaaagctatacctgaaatggataaaaggttgatgccggaatatgatgcaagaaaagtc
gccaagagcgagggaagaagatttactaatccaatatccaatttccaaaatgatcgccta
ccagaacccttaaaattaaagtcaactggtgttactcctcaacaaatggcagtttatgaa
gagtttgctcgcaatatacctggcttcttaccaatgacttcagatcgtgaacgtgatata
tcactttatataccaaaaagtattgttgaaataacaccggttcaacctgtacaaccattt
gcagcttctactgtaccaactatgccagttctaaatgcacaagtttacccatcaactgtt
agtaatgatgaagttggtgctatgttagaaaaacttgcaagtgaagtggaagtgatgatt
acgactttgaactctacttctccacaacaaaatacttcattacatggtttgttagaagcg
atcattgtaacacgtagatctcgtgatgctaccgcagcaatgacgatgttgaaaaaagcc
gttgataatcttattgatggaccacctttaacaaataatttaatggattctgaaactgtt
atgcgttaccgcgatcttcacctgcgagtattaaagtgccttcaagatcctcgcgcttat
gggttgcaatggaccaacaaaaacgtaactcgttgcctcacggaaagtcgagaagatttc
aggtataattttgaggccgtagatttactcatccgatcccatttgatcatattgggtcag
tatgatgtggctctggcacaagcggtcgaagcagggaatgcgcttgctactgcctttgct
attcaacttattcagttgtatttaatcgatgagagacaaactatccatgttaccgaatcc
gatttattccataccattgaggtactcgctcgaatggcccttcacaggtctgcaccagaa
ggaattccgctattcagattaaattcattaatcgaatcattgcgtattaatcacgaccca
gctgttctaaccgatagagcaccagctggtcccactgctcacatacactctggcatatta
caagttcgccaggcacgtgagtacgaagatccacctggattgatggaaaaaactgaatat
cttttgcgagagtgggtgaatatgttccataatccgcagtatgcacgcgatccaactaaa
gctttcggagtctttgtgcatcagatgaatattcatggaattctgaagactgatgatctc
ataacacgtttcttcaaacttagtacccagatgtgcgtcgaccactgttatcgtgctcta
agcgaaactagttctgccccatcaattgttcgagcgaaatgtttccacactctcgatgca
tttgttaggcttgttgctctattagttaaacattcaggggattctacaaatactcacacg
aagataaatttactcaacaaagttcttggcatcgtagcaggtgttcttttacaagatcat
gaactgcgcagtactgattttcagcagtgcccgtatcaccgtatttttataatgttgttt
ctggagctttgtgctcctgaaccagttcttgaagctgttaactatcaagttcttacagct
ttttgccacactttccatattctcagacctgccaaagcgccaggtttctgttatgcttgg
cttgaactagtatcccatcgtgtttttatcggacgtatgctcgccattacaccacaacaa
cgttgctggggtatatacgctcaacttttgattgatctctttaagtatcttgctccttat
ctccgtaatgctgaattggccaaaccagtcacacttttgtacaaaggtactctacgtgta
ttgcttgttttgctacacgactttccagagtttttgtgtgactatcattatggattttgc
gatgttatcccacctaattgcattcaaatgcgtaatcttatattgagtgcgtttccacgt
aatatgcgcttacctgatccattcacaccaaatctgaaagtggatatgcttcaggagatc
actcatgctcctagggtacttaccaattttgcttcgatgattcagcctatcacatttaaa
aaagaacttgatgtgtacttgaaaacgcgtgctccagttactttcctaggagatcttcgc
actaatcttcagcaagggcaggggctaggcatgcgttacaacattcagctaatgaatgca
ttggtcatctatgtaggcactcaggcaattaatttcatccgaagcaaaggacatgcacca
agtatgtcgacaatcgcgcattcatcacatatggatattttccagaatttagcagtcgat
ttagatacagagggtcgttacttgttcctcaatgcaatcgctaatcagttgcgttatcct
aatagccatacgcactattttagttgtactcttttgtacttgtttgctgaagctaatact
gaggcaatacaagaacagataacacgagtactgcttgagagactgattgttaatcgaccc
catccatggggcttgctaatcacatttattgaacttattaaaaacccaaactacaagttt
tggcaacacgagttcgttcattgcgcgcaagaaattgaaaaattatttgaatcagtagct
cgttcttgtatggtccagaagcaggtccaaccaacaccagaaccagaaatcccagagtga
DBGET
integrated database retrieval system
