Thalassiosira pseudonana: THAPSDRAFT_31160
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Entry
THAPSDRAFT_31160 CDS
T01078
Name
(RefSeq) suppressor of actin mutations protein-like protein
KO
K20298
vacuolar protein sorting-associated protein 52
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_31160
Membrane trafficking [BR:
tps04131
]
Protein recycling
Others
EARP complex
THAPSDRAFT_31160
Endosome - Golgi transport
Tethering complex
GARP complex
THAPSDRAFT_31160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps52_C
Vps52_CC
Sec3_CC
Motif
Other DBs
NCBI-GeneID:
7451553
NCBI-ProteinID:
XP_002285963
JGI:
31160
UniProt:
B8BSU0
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Position
1:171148..173304
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AA seq
657 aa
AA seq
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LASYSSTINSELVTLERECIALHREAAPDIKVLRDEMEVCDSILAGLQEMLLGFQADLSG
LSGDIRQLQEQSRSLAIQVENRRCAEEGLRLFLERIVIPPNLAECICRGEVDELFLECVK
DLEEKYAYVLVTEEDTEAGREMKQHLEKLRLRAVDRVRVYFLNVMKELRRPKTHVRMIQT
HALLKYEYLVDFLLVASPTIHAEIRDVYVESMSKTMHTLFRTYHKQLLTLDLRLATRVDL
ICVEEAALRDAFSTKVNMRKRGDAFVLGERAKVLDGFITAEGDAVVAGTPVPPINAHVAA
MNGEKYSYEMIFRSIMSHLIDASTNEYVFSRQLFKEYGQNDCFNLIFGKTLSLVLEQLET
YLFNCHDAIAILLMIKLTHSYKRTVKARHIDKVLEPFLDRMTNLLWPRLKMVMDAHLRSI
RGANAKKVGAGDIHPHLVSRRYAEFTCSVLLILNHMLMNDLDVMVEEMVLLLKRLADVHT
SNKKRIVFMINNLDQIITIFKERRVAGKELNRFTELLVQQRELFVEEELLQTFSKMIAFV
QQTECHMSGISAPRGARGVAAPADVVNPEVVESLVREFSTNWKAGIEQINRNVLSYFSNF
RNGMEILKQVLTQLLLYYTRFQDVIRKVWRGKPPSFCKDLVSTSVILAEIKKHALSI
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
ctcgcctcctattcctccactattaattcagaattggtcaccctggaacgagaatgcatt
gcgttgcacagggaggctgctccggatatcaaagtgctgcgagatgaaatggaagtgtgt
gattcgatattggcagggttgcaagagatgctgttgggatttcaagccgatttgtcgggg
ttgagcggagatatacgacaattgcaagaacagagtcgaagtttggcgattcaggtggag
aatcgacggtgtgccgaggagggactgcgcttgtttctagaacggattgtcattcccccc
aatttggcagagtgcatttgtaggggggaggtggacgagttgttcttggagtgtgtcaag
gatttggaagagaagtatgcctacgtcttggtgacagaggaggatacggaagcggggagg
gagatgaagcaacatttggaaaagttgagattgcgtgccgtggatagagtgagggtgtac
tttttgaatgtgatgaaggagttacgaaggccaaaaactcatgtgagaatgattcaaact
catgcgttgcttaagtatgagtatttggttgattttctgttggtggcttcccctacgatt
catgccgagattcgtgatgtgtatgtggagagcatgtccaagacaatgcataccttgttt
aggacatatcacaaacagttgctaacgttggatttacgattggcaacgagagtggatttg
atttgtgtggaggaggctgcgttgagggatgcattctcgacaaaggtcaatatgagaaag
aggggggatgcgttcgtcttgggcgaacgagccaaggtgttggatgggttcatcactgcc
gaaggcgatgcagtggttgctggaacaccagtgcctcccatcaatgctcacgtggctgca
atgaatggggagaagtactcttacgagatgatcttcagatccatcatgtctcatttgatt
gatgcttctaccaatgaatacgtcttttctcgtcaactattcaaagagtacgggcagaac
gattgcttcaatctcatcttcggcaagactctatcgttggtgttggaacagctggagacc
tatcttttcaactgtcacgacgctattgctatccttctcatgatcaaattgacacactcg
tacaaacgaacggtaaaggcacgtcacattgacaaggtactggagccgtttctagacaga
atgaccaatctactctggcctcgtttaaagatggtaatggatgctcatcttcgtagtatt
cgtggcgcgaatgccaagaaagttggagcgggagacatccacccccatttagtttctcgt
cggtacgctgagttcacgtgttccgttttgctcatattgaaccacatgcttatgaacgat
cttgacgtaatggtggaagagatggtacttcttctgaaacgccttgccgatgtgcacacc
tccaacaagaaacgaattgtcttcatgatcaacaaccttgatcaaatcattacaattttc
aaagagcgacgtgtggcagggaaagagttgaatcgtttcactgagttactcgttcaacaa
cgagagcttttcgtggaagaagaactcctacaaacattctccaaaatgattgcctttgtc
caacagaccgaatgtcacatgtctggaatctctgctccgaggggagcacgaggagtggct
gcaccggcagatgttgtcaatcctgaggtagtggagagtcttgttcgggagttctcaacc
aactggaaggcgggaattgaacaaatcaacaggaatgtgttatcgtacttctccaacttt
agaaatggcatggagattctgaaacaggtattgactcagttgctcttgtattacacgagg
ttccaggatgtcatcaggaaggtgtggcgaggaaagcctccgagtttctgcaaggacttg
gttagcacatctgtcattctcgcagagatcaagaaacatgcattgtctatctag
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