Thalassiosira pseudonana: THAPSDRAFT_37472
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Entry
THAPSDRAFT_37472 CDS
T01078
Name
(RefSeq) predicted protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tps
Thalassiosira pseudonana
Pathway
tps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THAPSDRAFT_37472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_37472
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
THAPSDRAFT_37472
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
THAPSDRAFT_37472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
Motif
Other DBs
NCBI-GeneID:
7450858
NCBI-ProteinID:
XP_002293904
JGI:
37472
UniProt:
B8CC81
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All DBs
Position
14:complement(295166..296570)
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AA seq
410 aa
AA seq
DB search
LNKVLGVVTRSLITNYEQSERGVNVQWDQRPWFRLLLDLVYELNLPNPALDPIKSGIVSV
FGSAFHVVQPLVVPGFSFAWLELISHRMFLSNLLLLKEQKGWGVMHQLMIDLLLFLEPHL
RKVELTDATKKYYDGALRVILMLVHDFPTFLAAYHLSFCNVIPENCVQLRNLVLSAIPKG
IPLHDPISRNFKIDRLPEIAKSPLILSNVVGPLASFKNNLDGFLKNQQPADFLGKLVPLL
RKGGKSELDAPTINSLVLYVGMQGLARLQNDQIASSLGRTPEMEIFQKLMELDDHGRYIS
LNAIANQLRYPSSHTHYFSCVMLFLFNESKDEGVKEQVTRVLLERLITQRPHPWGLLITF
IELIKNSKYQFWSHPFTRCATEIEKVFENVARSCMLPNGVQIAADGDAPQ
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
ctcaacaaggttcttggagtggtcacacgttccttgataacgaactacgaacagtctgag
cgtggtgtcaatgtacaatgggaccagaggccttggttccgtttgctacttgatttggtt
tacgagttgaatctcccaaatcctgccttggatcccatcaaatctggaatcgtcagcgtc
tttggcagtgcatttcatgttgtgcaacctcttgtggtgccaggcttctcctttgcatgg
ctagagttgatctcgcacaggatgttcctctcgaaccttcttcttttgaaggagcagaaa
ggttggggcgtcatgcatcagttgatgatcgacttgttgctcttcctcgagcctcatttg
cgtaaggtggaactcactgatgctacgaagaagtactacgatggagcacttcgtgtcatc
ttgatgctggtccatgactttcccacctttcttgcagcgtaccacctctccttctgcaac
gtcatccccgagaactgcgtccagctaaggaatctcgttctgtcggccattccaaagggc
attcctcttcatgatccgatttctcgcaactttaagattgatcgtcttcctgaaatcgca
aagagcccactcattctttccaatgtcgtcggacctttggcttcgttcaagaataatctc
gatggtttcctcaaaaaccagcagccagctgatttcctcggaaagttggtgcctttgctt
cgcaaaggtggcaagagcgagttagatgctcccacgatcaactctctcgtcttgtatgtc
ggcatgcagggccttgctcgtcttcagaatgatcagattgcgtccagtcttggcagaact
cctgaaatggagatatttcagaagttgatggagttggatgatcatggaaggtacatcagt
ctcaatgccattgctaaccagcttcgctacccatccagccatacacactacttttcgtgt
gttatgcttttcctcttcaacgagtcgaaggatgaaggtgtcaaagagcaggttacgagg
gtactactcgagaggctcattactcagcgtcctcatccttggggattgctcatcaccttc
attgagttgatcaagaactccaagtatcaattctggagtcatcctttcactcgttgtgcc
accgagattgagaaagttttcgagaacgtcgctcgttcgtgcatgttgccaaatggtgta
caaatcgctgcagacggagatgctccacagtag
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