Thalassotalea psychrophila: RGQ13_17465
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Entry
RGQ13_17465 CDS
T10151
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tpsy Thalassotalea psychrophila
Pathway
tpsy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpsy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RGQ13_17465 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpsy03021
]
RGQ13_17465 (rpoB)
03400 DNA repair and recombination proteins [BR:
tpsy03400
]
RGQ13_17465 (rpoB)
Enzymes [BR:
tpsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RGQ13_17465 (rpoB)
Transcription machinery [BR:
tpsy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RGQ13_17465 (rpoB)
DNA repair and recombination proteins [BR:
tpsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RGQ13_17465 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
WNC71888
UniProt:
A0ABY9TSS8
LinkDB
All DBs
Position
complement(4195125..4199153)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKSVQVMDYPFLLSIQLESFRKFIDIDATGAVGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPLFDVKECQIRGVTYSAALRVKLRMVIYDKEAAAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIMLRALEYTTEEILEMFFETTRFDIKKNKLVME
LVPERLRGETATFDLKLPNGDVLVEQGRRITARHIRALGKADVTTLDVPADYIVGRVLAK
EHVNKSTGEVIAEANAELTLELLAELTEAGFKTFDTLYMNEFDCGSYMSDTLRVDNSTNR
LEALVEIYRMMRPGEPPTKDAAEALFQNLFFAEERYDLSTVGRMKFNRRVGRSESTGSGI
LSHDDIISVMKTLISIRDGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLDAVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSCYARTNDYGFLETPYRKVVDGLI
TDDIDYLSAIEEGNFVIAQANAAVDADKRLVEGLVNCRHKNEFTLLSAEQVQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLKVDKPLVGTGMEKTIAVDSGVTAVAK
RGGVVDYVDASRIVVRVNENEMHAGEAGIDIYNLTKYTRSNQNTCINQRPTCNVGEPVQR
GDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSMLISERVTKEDRFTTIHIQELSCI
ARDTKLGSEEITSDIPNVGESALSKLDESGVVYIGAEVNGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKAADVKDSSLRVPNSVSGTIIDVQVFTRDGVEKDARAMEIEEMQLKEVKKD
LGDEFSILEDGIYARAKKLLLSSGLNESDLNGMSRDQWLSQSLSDEGQQTELEQIAEQYD
AIKADFDKKYEVKRRKITQGDDLQPGVLKIVKVYLAVKRRLQPGDKMAGRHGNKGVISNV
VPVEDMPHDKNGEPVDIVLNPLGVPSRMNIGQVLETHLGMACRGIGEKIDRMIKEQQELA
KLRIFLKDVYAVGESRQVVDIDSFSDDEVKRLADNLRAGLPIATPAFDGAAEKEIKELFR
LADMPESGQFTLFDGRTGRAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNLVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELDKE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttattctgagaagaagcgtattcgaaaggactttggtaaaagtgttcag
gtaatggattatccattcctgttgtctatccaactcgaatctttccgcaagtttattgat
atcgatgcaacgggtgcagtaggcttagaagccgctttccgtagcgtatttccaataaaa
agttattctggtaattcagaattacagtatgttagctaccgtttaggtgagccgttattt
gatgttaaagaatgtcaaattcgcggtgtaacttactctgccgctctacgtgttaaatta
cgcatggtaatttacgataaagaagccgcagccggtacagttaaagatattaaagaacaa
gaagtctacatgggcgaaatcccattgatgacggataatggtacctttgtaattaatggt
actgagcgtgttattgtttcgcaattacatcgttctccgggtgttttcttcgatcacgat
aaaggtaaaacccactcatcaggtaaagtgttatataacgcccgcgttattccttaccgt
ggttcatggttagactttgaattcgatcctaaagataacttatttgtacgtatagataga
cgtcgtaagttacctgcatcaattatgttacgtgccttagaatatacaacagaagaaatt
ctggaaatgttctttgaaacaacacgttttgatatcaagaaaaacaagttagttatggaa
cttgtgccagaacgtttacgtggtgaaaccgcaacgtttgatctcaaattaccaaacggc
gatgtacttgtagaacaaggtcgtcgtatcactgctcgtcacatccgtgctttaggtaaa
gccgatgtcactaccttagatgtacctgctgactatattgttggtcgcgtacttgctaaa
gagcatgtgaacaaaagtactggtgaagtaatcgctgaagcgaatgctgaattaacacta
gagctattagctgaattaactgaagctggctttaagacttttgacactttatacatgaat
gaattcgattgtggttcatacatgtcagacaccttacgtgttgataactctactaaccgc
ttagaagcgttagttgaaatttatcgtatgatgcgtccaggtgagccaccaacaaaagat
gctgctgaagcattatttcagaacttattcttcgccgaagaacgttatgacttatcaact
gttggtcgcatgaaatttaaccgccgtgttggtcgctcagaaagcactggctctggtatc
ttatcgcatgatgacatcatctcggtaatgaaaacgttaatttcaatccgtgacggtaaa
ggcgaagtggacgatatcgatcacttaggtaaccgtcgtatccgttctgttggtgaaatg
gctgaaaaccaattccgcgttggtctagttcgtgttgaacgtgctgtacgtgagcgttta
agtcttggtgatcttgatgcagtaatgccacaagatttaatcaacgctaagcctatttct
gcagctgttaaagaattctttggttcttcacagttgtcacagtttatggatcagaacaac
ccgttatcggaagttactcataaacgtcgtatctcagcgttaggccctggtggtttaaca
cgtgagcgcgcaggttttgaagtacgtgatgtacatccaacccattacggtcgtgtatgt
ccaatcgaaacgccggaaggtccaaacatcggtttgattaactcattatcatgttatgcc
cgtactaacgactatggtttcttagaaactccataccgtaaagtagtagacggtcttatc
actgatgatattgattatttatctgctatcgaagaaggcaactttgtaatcgctcaggcg
aatgctgcagttgacgctgacaaacgtttagtagaaggcttagttaactgtcgtcataag
aatgaatttactcttttgtctgcagaacaagttcaatatatggatgtatcaccacagcaa
attatctctgtggcggcatcacttattccattcctagagcatgatgatgctaaccgtgcc
ttgatgggcgcgaacatgcaacgtcaagcagtacctacactaaaagttgataagccttta
gttggtaccggtatggaaaaaactattgctgtagattcaggtgtaacggccgttgccaaa
cgtggcggtgttgttgactatgtagatgcgagtcgtatcgttgttcgtgttaacgaaaac
gaaatgcatgccggtgaagctggtatcgatatctacaacttaactaaatacactcgttct
aaccagaatacttgtattaaccaacgtccaacttgtaatgttggcgaaccagtgcaacgt
ggtgacgtgttagccgatggtccttctaccgatttaggtgagttggctcttggtcaaaac
atgcgtatcgcattcatgccttggaatggttataacttcgaggattcaatgttgatttct
gaacgtgtaacgaaagaagatcgtttcactactattcatattcaggaattatcatgtatc
gctcgtgacaccaaattaggctcagaagagattacttctgatatccctaacgttggtgag
tctgcattatctaaattagatgaatcaggtgttgtatacatcggtgcagaagttaacggc
ggcgacatcttagtgggtaaagttactcctaagggtgaaactcagttaacaccagaagaa
aaattattacgtgctatcttcggtgagaaagcagctgacgttaaagacagctctttacgt
gtaccaaactcagtttcaggtactatcatcgatgttcaagtattcactcgcgacggtgtt
gaaaaagacgcccgtgcgatggaaattgaagaaatgcaattgaaagaagttaagaaagat
cttggcgatgaattcagcattttagaagatggtatttatgcccgtgctaagaaacttcta
ttatcatctggtttaaatgagtctgaccttaatggtatgtctcgtgaccaatggttaagt
caaagcctaagcgatgaaggtcaacaaactgaacttgagcaaattgccgagcagtatgat
gccattaaagctgactttgataagaaatatgaagttaaacgtcgtaagatcactcaaggt
gatgacttacaaccaggcgtacttaaaatcgttaaagtttaccttgctgttaagcgtcgc
ttacaaccaggtgacaagatggctggtcgtcatggtaacaaaggtgttatctctaacgtt
gttcctgtggaagatatgccacatgacaagaatggtgagccggtagatatcgtgcttaac
cctcttggtgtaccttcacgtatgaacatcggtcaggttttagaaactcacttaggtatg
gcgtgtcgcggtatcggtgaaaaaattgaccgtatgatcaaagagcagcaagaattagcg
aaacttcgtatattcttgaaagatgtttacgcagttggcgaatctcgccaagtagtagac
attgatagcttctctgatgatgaagttaagcgtttagctgataaccttcgtgccggttta
ccaattgcaacaccagcgtttgatggtgctgcagaaaaagaaattaaagaactattccgt
ttggcagatatgccagaaagcggtcagttcactttatttgacggccgtactggtcgtgca
tttgagcgtcctgttaccgtaggttatatgtacatgctgaaactgaatcacttagttgat
gacaagatgcatgcacgttctactggttcttactcactagttacgcaacaaccacttggt
ggtaaagcgcaatttggtggtcaacgtttcggtgagatggaagtatgggcacttgaagca
tacggtgctgcttacactctacaagaaatgcttacggttaaatctgatgacgttaacggt
cgtactaaaatgtacaaaaaccttgttgacggtgatcaccgtatggaaccaggaatgcct
gagtcattcaacgtattgttgaaagaaatccgttcgttaggtatcaatatcgaactggac
aaggaataa
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