KEGG   Tatumella ptyseos: NCTC11468_00581
Entry
NCTC11468_00581   CDS       T05493                                 
Symbol
rpoD
Name
(GenBank) Sigma-70
  KO
K03086  RNA polymerase primary sigma factor
Organism
tpty  Tatumella ptyseos
Pathway
tpty02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:tpty00001]
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    NCTC11468_00581 (rpoD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tpty03021]
    NCTC11468_00581 (rpoD)
Transcription machinery [BR:tpty03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     NCTC11468_00581 (rpoD)
SSDB
Motif
Pfam: Sigma70_ner Sigma70_r1_1 Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 HTH_SUN2 PAC1 TMPIT
Other DBs
NCBI-ProteinID: SQK72330
UniProt: A0A2X5PFZ9
LinkDB
Position
1:complement(542539..544377)
AA seq 612 aa
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVVEEAP
DADDLMLNENSSDTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDKVEAGETRLSDIITGFVDPNAEEDLAPTA
THVGSELSEEDRDDDEDEEDDDDNSDDDNSIDPELAREKFTELRAQYEVTRNVIKSKSRS
HADAIVEIQNLSEVFKQFRLVPKQFDYLVNNMREMMDRVRGQERAIMRLCVEICKMPKKN
FITLFTGNETNDTWFKAALALKKPWSEKLQEVQEDVSRGLQKLAQIEEETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq 1839 nt   +upstreamnt  +downstreamnt
atggagcaaaacccgcagtcacagctgaagctacttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatattgtcgactccgatcag
attgaagacatcattcagatgatcaacgacatgggcatccaggtggtggaagaagccccg
gatgctgatgatctgatgctgaatgaaaacagttcggatactgatgaagatgcagcagaa
gccgctgcgcaggtattatccagcgtagaatccgaaattggccggacgacagacccggtc
cgcatgtatatgcgcgagatggggacagtagaactgctgacccgtgaaggcgaaatcgac
attgctaagcgcattgaagatggtattaaccaggttcagtgctccgtcgcagaatatccg
gaagcaatcacctacctgcttgagcagtacgacaaagttgaagccggtgaaacccgtctt
tccgatatcattaccgggtttgtcgatccgaatgctgaagaagatctggcaccgacagca
acacacgtcgggtctgaactttcagaagaagatcgtgacgatgatgaagacgaagaagac
gacgacgacaattcagatgacgataactctatcgatcctgaactggcgcgcgagaaattt
actgaattacgtgctcagtatgaagtcacccgtaacgtcatcaaaagcaaaagccgcagc
catgctgacgctattgtcgaaatccagaacctgtcagaggtctttaagcagttccgctta
gtgcctaaacagtttgattatctggtcaacaatatgcgcgaaatgatggatcgtgtccgt
ggtcaggaacgcgccatcatgcgactgtgtgttgaaatctgcaagatgccgaagaagaac
ttcatcacgttattcaccggtaacgagacgaacgatacctggttcaaagcggctctggcc
ctgaagaaaccatggtccgaaaaactgcaggaagttcaggaagatgtttcccgtggcctg
cagaaactggcacagattgaagaagagaccggcctgacgattgagcaggtaaaagacatt
aaccgtcgtatgtccatcggtgaagcgaaagcccgccgtgcgaaaaaagagatggttgaa
gcgaacctgcgtctggtgatctccattgctaagaaatacaccaaccgtggtctgcagttc
ctggatctgattcaggaaggtaacatcggtctgatgaaagccgttgataagtttgaatac
cgtcgcggttataaattctctacctatgcaacctggtggatccgtcaggcaatcacccgt
tcgattgcagaccaggcaaggactatccgtattccggtgcacatgattgaaaccatcaac
aaactgaaccgtatttcgcgtcagatgttgcaggaaatgggtcgtgagccttctccggaa
gaactggctgagcgtatgctgatgccggaagataagatccgtaaggtattaaaaatcgct
aaagagccgatttcgatggaaacaccgatcggggatgatgaagattcacatctgggcgac
tttatcgaagataccacgctggaactgccactggactctgcaacctctgagagcctgcgt
tcagcaacccatgatgttctggccggactgactgcccgtgaagcaaaagttctgcgtatg
cgtttcggtattgatatgaacactgaccataccctggaagaagtgggtaaacagtttgat
gttacccgtgaacgtatccgtcagatcgaagcgaaagcactgcgtaaactgcgtcaccca
agccgctcagaagttctgcgcagcttcctggatgactaa

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