Tatumella ptyseos: NCTC11468_00581
Help
Entry
NCTC11468_00581 CDS
T05493
Symbol
rpoD
Name
(GenBank) Sigma-70
KO
K03086
RNA polymerase primary sigma factor
Organism
tpty
Tatumella ptyseos
Pathway
tpty02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tpty00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCTC11468_00581 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpty03021
]
NCTC11468_00581 (rpoD)
Transcription machinery [BR:
tpty03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCTC11468_00581 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_SUN2
PAC1
TMPIT
Motif
Other DBs
NCBI-ProteinID:
SQK72330
UniProt:
A0A2X5PFZ9
LinkDB
All DBs
Position
1:complement(542539..544377)
Genome browser
AA seq
612 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVVEEAP
DADDLMLNENSSDTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDKVEAGETRLSDIITGFVDPNAEEDLAPTA
THVGSELSEEDRDDDEDEEDDDDNSDDDNSIDPELAREKFTELRAQYEVTRNVIKSKSRS
HADAIVEIQNLSEVFKQFRLVPKQFDYLVNNMREMMDRVRGQERAIMRLCVEICKMPKKN
FITLFTGNETNDTWFKAALALKKPWSEKLQEVQEDVSRGLQKLAQIEEETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctacttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatattgtcgactccgatcag
attgaagacatcattcagatgatcaacgacatgggcatccaggtggtggaagaagccccg
gatgctgatgatctgatgctgaatgaaaacagttcggatactgatgaagatgcagcagaa
gccgctgcgcaggtattatccagcgtagaatccgaaattggccggacgacagacccggtc
cgcatgtatatgcgcgagatggggacagtagaactgctgacccgtgaaggcgaaatcgac
attgctaagcgcattgaagatggtattaaccaggttcagtgctccgtcgcagaatatccg
gaagcaatcacctacctgcttgagcagtacgacaaagttgaagccggtgaaacccgtctt
tccgatatcattaccgggtttgtcgatccgaatgctgaagaagatctggcaccgacagca
acacacgtcgggtctgaactttcagaagaagatcgtgacgatgatgaagacgaagaagac
gacgacgacaattcagatgacgataactctatcgatcctgaactggcgcgcgagaaattt
actgaattacgtgctcagtatgaagtcacccgtaacgtcatcaaaagcaaaagccgcagc
catgctgacgctattgtcgaaatccagaacctgtcagaggtctttaagcagttccgctta
gtgcctaaacagtttgattatctggtcaacaatatgcgcgaaatgatggatcgtgtccgt
ggtcaggaacgcgccatcatgcgactgtgtgttgaaatctgcaagatgccgaagaagaac
ttcatcacgttattcaccggtaacgagacgaacgatacctggttcaaagcggctctggcc
ctgaagaaaccatggtccgaaaaactgcaggaagttcaggaagatgtttcccgtggcctg
cagaaactggcacagattgaagaagagaccggcctgacgattgagcaggtaaaagacatt
aaccgtcgtatgtccatcggtgaagcgaaagcccgccgtgcgaaaaaagagatggttgaa
gcgaacctgcgtctggtgatctccattgctaagaaatacaccaaccgtggtctgcagttc
ctggatctgattcaggaaggtaacatcggtctgatgaaagccgttgataagtttgaatac
cgtcgcggttataaattctctacctatgcaacctggtggatccgtcaggcaatcacccgt
tcgattgcagaccaggcaaggactatccgtattccggtgcacatgattgaaaccatcaac
aaactgaaccgtatttcgcgtcagatgttgcaggaaatgggtcgtgagccttctccggaa
gaactggctgagcgtatgctgatgccggaagataagatccgtaaggtattaaaaatcgct
aaagagccgatttcgatggaaacaccgatcggggatgatgaagattcacatctgggcgac
tttatcgaagataccacgctggaactgccactggactctgcaacctctgagagcctgcgt
tcagcaacccatgatgttctggccggactgactgcccgtgaagcaaaagttctgcgtatg
cgtttcggtattgatatgaacactgaccataccctggaagaagtgggtaaacagtttgat
gttacccgtgaacgtatccgtcagatcgaagcgaaagcactgcgtaaactgcgtcaccca
agccgctcagaagttctgcgcagcttcctggatgactaa
DBGET
integrated database retrieval system