Thermacetogenium phaeum: Tph_c25920
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Entry
Tph_c25920 CDS
T02276
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tpz
Thermacetogenium phaeum
Pathway
tpz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Tph_c25920 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpz03021
]
Tph_c25920 (rpoC)
03400 DNA repair and recombination proteins [BR:
tpz03400
]
Tph_c25920 (rpoC)
Enzymes [BR:
tpz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Tph_c25920 (rpoC)
Transcription machinery [BR:
tpz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Tph_c25920 (rpoC)
DNA repair and recombination proteins [BR:
tpz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Tph_c25920 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AFV12766
UniProt:
K4LIE3
LinkDB
All DBs
Position
complement(2604193..2607756)
Genome browser
AA seq
1187 aa
AA seq
DB search
MPEVEVSNQIFERIRIGLASPEQIRAWSSGEVKKPETINYRTLKPERDGLFCERIFGPTK
DWECHCGKYKRVRYKGVICDRCGVEVTRSKVRRERLGHIELAAPVSHIWYFKGIPSRMGL
ILDMSPRSLEKVLYFVSYIVLDPGDVPGLTKKQLLTESEYRELKEQYGNRFRAGMGAEAI
KELLEEIDLDELSEELRAELRESTGQRKVRAIRRLEVVEAFRKSGDRPEWMILEVIPVIP
PELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDAL
IDNGRRGRPVTGPGNRPLKSLSDMLKGKHGRFRQNLLGKRVDYSGRSVIVVGPELKLHQC
GLPKEMALELFKPFVMKCLVERGFAHNIKSAKRMVERARPEVWDVLEDVIKEHPVLLNRA
PTLHRLGIQAFEPILVEGRAIQIHPLVCTGYNADFDGDQMAVHVPLSAEAQAEARVLMLS
AHNLLNPKDGRPVVAPTQDMVLGCYYLTIDKKGDQDKGKVKYFRDADEVIFAYESKELDL
HSHVKVRYNGKIIETTVGRLIFNQVIPPELGYYNEVVGKKKLAEIIHKCYRKLGYGRTAK
LLDGIKKLGFTYATKAGITVGVTDVTIPPDKEEIIAKAESDVEKVEQQYRRGLITEDERY
EKVTGIWKKATDEVTDSLLEHLDPMNPIYMMAISGARGNIQQIRQLAGMRGLMADPSGQI
IDLPIKSNFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDC
GTTEGFIVEAIKDGDDVIESLEERIIGRTALKPIVHPETGEVIVPADAEITEDDAERIVQ
AGIKKVEIRSVLTCRTRYGTCRKCYGRNMATGYPVDIGEAVGIMAAQSIGEPGTQLTMRT
FHTGGVAGEDITQGLPRVEELFEARKPKGQAIIAECNGVVKIREDKERKEVELLGEEGER
HVYQIPFGSRLRVEDGDYVEAGQELTEGSINPHDLLQVKGVRAVQDYLLREVQRVYRMQG
VDINDKHIEVMIRQILRKVKVEDPGDTELLPGGLIDAFELEDENARAIAEGKKPATAKPV
ILGITKASLATDSFLSAASFQETTRVLTEAAIKGKIDPLLGLKENVIIGKLIPAGTGMSR
YRSIKVYNQEVEDSEKAGEEAGTPADQKASGAVLEEGSGELQVPHIS
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
ttgccggaagtagaggtcagcaatcagatctttgagcgtatccggatcggccttgcttct
ccagagcaaatccgggcctggtctagtggggaagtgaaaaaaccggagaccatcaattac
cgcacactaaaacccgaacgggacggactcttctgtgagcgaattttcggtcctaccaaa
gactgggaatgtcactgcggaaagtataagcgtgttcgttataaaggcgttatctgtgac
cgctgcggggtggaggttacccgctccaaggtgcggcgggaaaggctggggcatatcgag
ctggcggcacctgtatcccatatctggtattttaaggggatccccagccgcatggggctt
attctggatatgtccccccgctctctggaaaaggttctttacttcgtttcctatatagtg
ctcgatcctggtgatgttccgggcctgacgaaaaaacagctgctgacggaatccgagtac
cgggagctgaaggagcagtacggcaaccgctttcgtgcggggatgggggccgaagccatc
aaagagctgctggaagagattgatctggatgagctgtccgaagaattgcgggcggaactc
cgggagtctacaggtcaacggaaggttcgggcgattcggcgcctggaagtggtggaggct
ttccggaaatcgggtgaccggccggagtggatgatccttgaggttattccggtgatcccg
ccggagctgcggccgatggtgcagctggatggcggcaggtttgctacctccgacctcaac
gacctttatcgcagggtaatcaaccgcaacaacaggctgaagaggctgctggacctggga
gctcctgatatcatcgtcaggaatgaaaagcggatgctccaagaggcagtcgatgcgctt
atcgataacggaaggcgcggccgcccggtgaccgggccgggaaacagaccgttgaagtct
ctcagcgatatgctgaagggcaaacacggtcgttttcgccagaacctcctgggaaagagg
gtggactactccgggcgttctgtgattgtcgtcgggcccgagttgaagcttcatcagtgc
ggtcttcccaaggaaatggcgctggagctctttaagcctttcgttatgaaatgcctggta
gaaaggggctttgctcacaacatcaagagcgccaagcgcatggtggaaagggcgcgtcct
gaggtgtgggacgttttagaggatgttatcaaggagcacccggtgcttctcaaccgtgcg
cccacactgcacaggctggggattcaggcttttgagccgatactggttgagggtagggcg
attcagattcaccccttggtctgcacaggctataacgccgacttcgacggtgaccagatg
gccgttcatgttcctctgtctgctgaggctcaggcggaggctcgtgttctcatgctttcg
gctcacaatctcctcaacccgaaggatgggcgtccggtggttgctcccactcaggacatg
gtgctcggctgctactacctgaccattgacaaaaaaggtgaccaggataagggtaaagta
aaatacttccgggatgccgatgaagtcatctttgcctacgaaagcaaggagctcgacctg
cattcccacgtcaaagtgcgctacaacggcaagatcatcgagacgactgtgggccggctg
atcttcaaccaggtgatcccgcctgaactggggtactataatgaagttgtggggaagaaa
aagctggccgagatcatccataagtgctatcgcaaactgggttacgggcgaacagcaaag
ctcctcgacggtattaagaaactggggtttacctacgccacgaaggcggggattaccgtg
ggggtgaccgatgtcaccatccctcctgacaaagaggaaatcatcgccaaagccgaaagc
gatgttgaaaaggtagagcagcagtacagaagagggctgattacggaagatgagcgttac
gagaaggtaaccgggatctggaagaaggccactgatgaggtgaccgattccctgctggag
cacctcgatcccatgaaccctatctacatgatggccatttccggcgcccggggcaatatc
cagcagatccgacagctggctggaatgcgcggcttaatggcggatccctccggtcagatt
atcgaccttcccatcaagtccaacttcagggaggggctgacggtactggagtacttcatc
tcgacgcacggagccaggaaagggcttgcggacactgccttaagaacggcggactccggt
tacctgacccgacggctggtggatgttgctcaggatgtcatcgtgcgggaggatgactgc
ggcactacagagggatttatcgtcgaagccatcaaagacggggatgacgtcattgagtcc
ttagaggagaggatcatcggcagaacggccttaaaaccgattgtccatccggaaaccggt
gaggtgatcgtcccggcagacgcggagatcacggaggatgatgccgaacgcatcgtccag
gccgggatcaaaaaggtggagatccgcagcgtgctcacctgccggactcgctacggaacc
tgcaggaagtgctatggcagaaatatggctaccggataccctgtggacatcggtgaggct
gtgggcatcatggctgctcagtctatcggcgaaccggggacccagcttaccatgcgcact
ttccatacgggtggtgttgccggagaggatattactcagggtttgccgcgcgttgaagag
ctgttcgaggcgcgcaaacccaaggggcaggccataatcgccgaatgcaacggcgtcgtc
aagatcagggaagataaagagaggaaagaggtcgaactcctgggtgaggaaggagaaagg
catgtctaccagatacccttcggctcccggctgcgggtggaagatggtgactatgtagaa
gccggacaggaactgaccgaaggctccatcaacccccacgacctcctgcaggtaaagggt
gtgcgcgccgttcaggactacctgctgcgagaagtgcagcgcgtttaccggatgcaggga
gtggatatcaacgacaagcatattgaggtcatgatcaggcagatactgcgcaaagtcaag
gttgaggatccgggggatacggagctgctgcctggagggctcatcgatgcctttgaactg
gaagacgaaaacgccagagctattgccgaagggaagaagccagcaacagccaaaccggtg
atcctgggaattaccaaggcctctctggcaacggattccttcctctcggcggcttctttc
caggagacaacgagggtcttgaccgaagctgccatcaaggggaagatcgatcctctgctc
ggcctcaaagaaaacgtcatcatcggaaagttgatcccggcgggtacggggatgtcccgc
taccgcagtatcaaggtatacaatcaggaagtggaagattccgaaaaagcgggagaagaa
gctggcactccagcggaccaaaaggcgtccggagcagtgctggaggaagggagcggggaa
ttgcaggtcccgcacatcagctga
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