Truepera radiovictrix: Trad_2004
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Entry
Trad_2004 CDS
T01254
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tra
Truepera radiovictrix
Pathway
tra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Trad_2004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tra03019
]
Trad_2004
03400 DNA repair and recombination proteins [BR:
tra03400
]
Trad_2004
Enzymes [BR:
tra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Trad_2004
Messenger RNA biogenesis [BR:
tra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Trad_2004
DNA repair and recombination proteins [BR:
tra03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Trad_2004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HTH_41
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADI15118
UniProt:
D7CQY4
LinkDB
All DBs
Position
2161557..2163260
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AA seq
567 aa
AA seq
DB search
MAAPAPLDPDTHRQRAQQLLRAFGLTHFRPGQQEAILGALSGRDVLAVMPTGAGKSLVYQ
LPALEGAGLTVVVSPLIALMGDQVARLQRRGVAAAALTSALTERQQAQVFGALPELRLLY
LSPERLQSAALRRALVRIRVARLVVDEAHCISSWGHDFRPDYRRLGALRRALGTPPVTAL
TATATPAVRRDIAASLALEDPLEVLTGFDRPNLAYRVWWAPFERLKLQLVEHALRAQPGA
SIIYAGTRAGVERLSAHLTSRGIAARPYHAGMAAEARAAVQRAFLEGRAPLLVATNAFGM
GIDKPDIKAVLHVDPPTSLEALYQEAGRAGRDGESARCTLLVGPGELERQARRVALSTPT
LLDLKRLWVLLRNHGAFGAAAPPVTAEGAAAALGLGRGKLVGALELLERHKVIRLERQRG
ALTLALVGPTPPPPEAFEALRADTLALQRAKAALWEAVRRYALTPRCRRAQLLAYFGDEA
PPRGACRCDVCTTEGRTPLLGDAARVLGRCTRPRRRRALDGAFATPLETEALLAWLRREG
YVRAALGWYRASAAGRRALARAEVSAR
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggcggccccggctcccttagatcccgacacgcaccgccagcgcgcgcagcagcttctg
cgggcgtttggcctgacgcactttcgccccggacaacaggaggccatcctcggcgccctc
agcggacgcgacgtgctcgcggtgatgcccacgggcgccggcaaatcgctcgtctaccag
ctccccgcgctcgagggcgcggggctgacggtcgtcgtcagcccgctcatcgcgctcatg
ggcgaccaggtcgcgaggttgcagcggcgcggggtcgccgccgccgccttaacgagcgcg
cttaccgaaaggcagcaggcgcaggtgtttggggcgctccctgagctgcggctcctctac
ctctcccccgaacggctgcagagcgctgcgctgcggcgcgccctcgtccggatacgcgtc
gcgcggcttgtggtggacgaagcgcactgcatctcgagctggggccacgactttcgaccc
gactaccgccgcttgggtgcgctgcggcgcgcgctgggtacacccccggtgacggcactc
accgcaaccgcgaccccggcggtccgccgcgacatcgcagcctcgctcgcgctcgaagac
cccctcgaggtcctcaccggcttcgaccggccgaacctcgcctaccgcgtctggtgggcg
ccttttgagcgcctcaagctgcagctcgtcgagcacgccctccgcgcgcagccgggagcg
agcatcatctacgcggggacgcgcgcgggggtggagcgcctcagcgcgcacctcacaagc
cgtgggatagcggcgcgcccctaccacgcgggcatggcggcagaggcgcgcgcggcggtg
caacgggcctttttggagggtcgggcgccccttctcgtcgccacgaacgctttcggcatg
gggatcgacaaacccgacatcaaggccgtgctgcacgtcgacccgcccacctcgctcgag
gccctctaccaggaggctgggcgcgccggccgcgacggcgagagcgcccgctgcaccctg
ctcgtcggccccggcgagctcgagcgccaagcgcggcgcgtcgcgctcagcacccccacg
ctgctcgacctcaagcggctctgggtgctgctgcgcaaccacggggcgttcggcgcggcg
gcgccgccggtcacggccgaaggggctgccgcggcgctcggcctcggccggggcaaactc
gtcggcgcgctcgagctgttggaacgccacaaggtgattcggctcgagcggcaaaggggc
gcgctcacgctcgccctggtgggccccaccccacccccgcccgaggctttcgaggcgctg
cgcgccgacaccttggcgctgcaaagggccaaagcggcgctctgggaggcggtgcgccgt
tacgccctgacgcccaggtgccgccgcgcgcagctcctcgcctacttcggcgacgaggcg
ccgccaaggggcgcgtgccgctgcgacgtctgcacgaccgaggggcgcaccccgctgctc
ggcgacgctgcgcgggtgctggggcgctgcacgcggccgcggcggcggcgcgcgctcgac
ggggcgtttgccaccccgttggaaaccgaggcgctcctagcttggctgcggcgcgagggg
tacgtgcgcgcggcgctcggctggtaccgcgcgagcgccgcggggcggcgggcgctggcg
cgcgccgaggtgagcgcccggtga
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