Talaromyces rugulosus: TRUGW13939_01983
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Entry
TRUGW13939_01983 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K12878
THO complex subunit 1
Organism
trg
Talaromyces rugulosus
Pathway
trg03013
Nucleocytoplasmic transport
trg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TRUGW13939_01983
09122 Translation
03013 Nucleocytoplasmic transport
TRUGW13939_01983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trg03019
]
TRUGW13939_01983
03041 Spliceosome [BR:
trg03041
]
TRUGW13939_01983
Messenger RNA biogenesis [BR:
trg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
TRUGW13939_01983
Spliceosome [BR:
trg03041
]
Complex C
Other components
EJC/TREX
TRUGW13939_01983
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
TRUGW13939_01983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Thump_like
DUF5633
Motif
Other DBs
NCBI-GeneID:
55989493
NCBI-ProteinID:
XP_035341072
UniProt:
A0A7H8QNZ7
LinkDB
All DBs
Position
I:complement(join(5814160..5814559,5814627..5814940,5814992..5815159,5815212..5815865,5815919..5816037,5816102..5816180,5816244..5816474))
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AA seq
654 aa
AA seq
DB search
MSNDTIESVIAYRDLVRDLLAKAAEIKQSDNVEPPLMEADLGDYVSRIRPKSDNETNKPH
KYAAVETAFREKFYELLASTSIDDPAFVNMWNLLDLVSIFSDNEQCEAGLIFWLIEELLD
SQTVEGCRKVFDYLESRREINTAKHFESKKLIILRSCNELLRRLSRAEDTVFCGRVFIYM
FQSFPLGDKSSVNLRGEFHTENVTTFDEVAKKPDGDAMEVEPAEPGTQTAETESQTTQAP
ENEGGEASKEKKADSTPAPDAKEDKKIDLDALYPIFWSLQGFFSSPTRLFDSQNFSTFRS
GLKTTLKTFKLLNADINTRGSTKAPEELRRGLKRKRNGEGVEISNSFNPKYLTSRELFGL
EVNDIAFRRHVLVQALILLDFILSLTTQARQRLLKLVQPGKAVNKTVLYQYTISDDDAKW
ASQTRDTVADYLQQGADGKFYYRMVDTVLSRDKNWVRWKVENCPPIEKPAIKEEDYLQAR
ENAVKVYASKRLRPAPMGSLDLKFLSEGDATSSLEQLKQADRYGTPAADSFMMGIVDDEF
DIDMAKEPDEKEAAERAKANKVWRTLRLSARSKLFEFEKIEDGKKINLLFASPAEESKDG
GGSVEDTSKKTTDQQDDSAKEESKDETSQEPSQENPSSSTIPETQSEETTAVAT
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgatactattgagtcggtcatcgcgtaccgcgatctggtccgcgacttgctg
gcaaaagcagcagagatcaaacagagcgacaatgtcgagccaccgttgatggaagcagat
cttggtgattatgtatcgcgcatacgcccgaaatccgataacgaaacgaacaaaccccat
aaatatgcggccgtggagacggcgtttcgggagaaattctacgagttgctggcttcaact
tcgatagacgatcccgccttcgtgaatatgtggaatctattagaccttgtttcgatcttt
tccgataatgaacaatgcgaagctggccttattttttggctaatcgaagagctcctcgac
agccagacagtggagggatgccggaaggtgtttgactatctggagtcgcgaagagaaatc
aatacagcgaaacactttgaatcaaagaaactgattatcctacgctcatgcaacgagcta
ctccgtcgactttcgagggcggaagataccgttttctgcggccgagtgttcatctacatg
ttccagagtttccccctaggcgataagagttcggtcaaccttcggggagagtttcacacg
gaaaacgtcaccacctttgatgaagtagccaagaaaccagacggggatgccatggaggtt
gagcctgccgagccgggaacacaaacagcagaaaccgagtcacagacgacgcaagctcct
gaaaacgagggaggcgaagctagcaaagaaaagaaggccgattcaacacctgcaccagat
gcgaaggaagataaaaagattgatttggatgcactctaccctatcttttggagtctgcaa
gggtttttctcgtcgccgacgagactatttgactctcagaatttttcgactttccgttct
ggtcttaaaaccacattaaagacgttcaaactactcaacgccgatatcaatactcgaggt
tctacaaaagcacccgaggaactacggcgaggtttgaagcgcaagcgcaacggagaaggg
gtggaaatatcaaatagcttcaaccccaagtatctgactagtcgtgaattgttcggccta
gaggtgaacgatattgcattccgacgacatgtccttgtgcaggccttgattctactagac
tttatcctctcgttgaccacacaagcgcgccagagactgttgaagctagtccagccgggc
aaggcagtcaataagaccgtgctatatcaatacaccattagtgatgatgatgccaaatgg
gcatcacagacgagggacacagtcgcagactatttacagcagggagctgatgggaaattt
tactatcgaatggtcgatacagtcctttcgcgagacaaaaattgggttcgctggaaggtt
gaaaattgcccgcctattgaaaagccagcgatcaaagaggaggactatctccaagctcga
gagaatgcggtcaaagtgtacgccagcaaacggctgcggcctgcaccaatgggctcgctt
gatctcaaatttctatcagagggcgatgcgacttctagcctggagcaattaaagcaggct
gatcgatacggcactcctgctgcagactcgtttatgatggggattgtagacgacgaattc
gatatcgacatggccaaagaacccgacgaaaaggaggccgcggaacgggccaaggcgaac
aaggtgtggcgcaccttgcggttatctgccagaagcaagcttttcgaattcgagaaaatc
gaagacggcaagaagatcaatctgctgtttgcgagcccggcagaggagagcaaggacggc
ggcgggtctgtggaggatacgtccaagaaaacaacagatcagcaggatgacagcgcgaag
gaggagtcaaaagacgaaacttcacaggagccctcacaggagaacccgtcgtcgtcgact
ataccggagacgcaatctgaggagacgactgctgtagctacataa
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